F-group (family)
5001.1.1.6 Bac_rhodopsin
Ligands and drugs
857
Member domains
775
with ligand contacts (≤ 4 Å)
90.4% of members
601
with DrugDomain annotations
70.1% of members
197
with a DrugBank compound
23.0% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 5001.1.1.6 belongs to X-group 5001 Family A G protein-coupled receptor-like, which binds 10.2 ligand superclasses per 20 proteins, broader than 95% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB03646 | L2P | 2,3-di-O-phytanyl-sn-glycerol | 71 |
| DB02293 | L3P | (2S)-2,3-bis{[(3R,7R)-3,7,11,15-tetramethylhexadecyl]oxy}propyl (2R)-2-hydroxy-3-[(hydroxyphosphinato)oxy]propyl phosphate | 33 |
| DB02451 | BNG | B-nonylglucoside | 28 |
| DB03831 | MPG | [(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate | 19 |
| DB03402 | L1P | 1,2-Di-1-(3,7,11,15-Tetramethyl-Hexadecane)-Sn-Glycero-3-Phosphate | 6 |
| DB04540 | CLR | Cholesterol | 5 |
| DB11460 | SQL | Squalene | 5 |
| DB00167 | ILE | Isoleucine | 4 |
| DB03796 | PLM | Palmitic Acid | 4 |
| DB01637 | ARC | 3,7,11,15-tetramethyl-hexadecan-1-ol | 3 |
| DB08558 | SOG | 2-HYDROXYMETHYL-6-OCTYLSULFANYL-TETRAHYDRO-PYRAN-3,4,5-TRIOL | 3 |
| DB02379 | BGC | Beta-D-Glucose | 2 |
| DB04327 | PEE | Phosphatidylethanolamine | 2 |
| DB00160 | ALA | Alanine | 1 |
| DB00974 | EDT | Edetic acid | 1 |
| DB02914 | ANR | Anhydrovitamin A | 1 |
| DB03690 | PCW | (Z,Z)-4-Hydroxy-N,N,N-Trimethyl-10-Oxo-7-[(1-Oxo-9-Octadecenyl)Oxy]-3,5,9-Trioxa-4-Phosphaheptacos-18-En-1-Aminium-4-Oxide | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| RET | RETINAL | 640 |
| LFA | EICOSANE | 282 |
| OLC | (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate | 192 |
| OLA | OLEIC ACID | 161 |
| NAmetal | SODIUM ION | 137 |
| CL | CHLORIDE ION | 80 |
| L2P | 2,3-DI-PHYTANYL-GLYCEROL | 72 |
| D10 | DECANE | 58 |
| C14 | TETRADECANE | 52 |
| LI1 | 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL | 51 |
| OCT | N-OCTANE | 51 |
| DD9 | nonane | 47 |
| 22B | BACTERIORUBERIN | 39 |
| HP6 | HEPTANE | 35 |
| TRD | TRIDECANE | 34 |
| UND | UNDECANE | 34 |
| L3P | 2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3'-SN-GLYCEROL-1'-PHOSPHATE | 33 |
| MYS | PENTADECANE | 32 |
| R16 | HEXADECANE | 31 |
| BNG | nonyl beta-D-glucopyranoside | 30 |