T-group (topology)
5022.1.1 Subunit XII of photosystem I reaction centre, PsaM
Ligands and drugs
233
Member domains
166
with ligand contacts (≤ 4 Å)
71.2% of members
96
with DrugDomain annotations
41.2% of members
89
with a DrugBank compound
38.2% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 5022.1.1 belongs to X-group 5022 Subunit XII of photosystem I reaction centre, PsaM, which has 17 proteins with classified ligands. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB06755 | BCR | Beta carotene | 75 |
| DB02133 | CLA | Chlorophyll A | 41 |
| DB02043 | LHG | 1,2-Dipalmitoyl-Phosphatidyl-Glycerole | 25 |
| DB03426 | DGD | Digalactosyl Diacyl Glycerol (Dgdg) | 2 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| CLA | CHLOROPHYLL A | 161 |
| BCR | BETA-CAROTENE | 123 |
| LHG | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | 57 |
| LMG | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | 30 |
| ECH | beta,beta-caroten-4-one | 17 |
| SQD | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | 11 |
| UNL | Unknown ligand | 8 |
| 8CT | (6'R,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene | 6 |
| A1L1F | [(2~{Z},4~{E},6~{E},8~{E},10~{E},12~{E},14~{E})-17-[(4~{S},6~{R})-4-acetyloxy-2,2,6-trimethyl-6-oxidanyl-cyclohexylidene]-6,11,15-trimethyl-2-[(~{E})-2-[(1~{S},4~{S},6~{R})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]ethenyl]heptadeca-2,4,6,8,10,12,14,16-octaenyl] octanoate | 6 |
| WVN | 1,3,3-trimethyl-2-[(1E,3E,5E,7E,9E,11E,13E,15E,17E)-3,7,12,16-tetramethyl-18-[(1R)-2,6,6-trimethylcyclohex-2-en-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohexene | 6 |
| CL7 | CHLOROPHYLL D | 4 |
| 45D | beta,beta-carotene-4,4'-dione | 2 |
| A86 | (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'-yl acetate | 2 |
| AJP | Digitonin | 2 |
| XAT | (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | 2 |
| CHL | CHLOROPHYLL B | 1 |
| DD6 | (3S,3'R,5R,6S,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol | 1 |
| DGD | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | 1 |
| LMU | DODECYL-ALPHA-D-MALTOSIDE | 1 |
| ZEX | (1R,2S)-4-{(1E,3E,5E,7E,9E,11E,13E,15E,17E)-18-[(4S)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol | 1 |