T-group (topology)
5038.1.1 Cytochrome c oxidase subunit I-like
Ligands and drugs
692
Member domains
446
with ligand contacts (≤ 4 Å)
64.5% of members
313
with DrugDomain annotations
45.2% of members
264
with a DrugBank compound
38.2% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 5038.1.1 belongs to X-group 5038 Cytochrome c oxidase subunit I-like, which binds 9.0 ligand superclasses per 20 proteins, broader than 81% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB03429 | CDL | Tetrastearoyl cardiolipin | 136 |
| DB02659 | CHD | Cholic Acid | 127 |
| DB18267 | HEM | Ferroheme | 87 |
| DB11588 | CMO | Carbon monoxide | 32 |
| DB03317 | HEC | Ferroheme C | 23 |
| DB14522 | OH | Hydroxide ion | 16 |
| DB11091 | PEO | Hydrogen peroxide | 14 |
| DB01728 | PEF | 1,2-dihexadecanoyl-sn-glycero-3-phosphoethanolamine | 11 |
| DB09114 | PCF | Colfosceril palmitate | 10 |
| DB09140 | OXY | Oxygen | 7 |
| DB03796 | PLM | Palmitic Acid | 6 |
| DB02451 | BNG | B-nonylglucoside | 4 |
| DB04327 | PEE | Phosphatidylethanolamine | 3 |
| DB07918 | HQO | 2-heptyl-4-hydroxyquinoline N-oxide | 3 |
| DB08689 | UQ1 | Ubiquinone Q1 | 2 |
| DB13075 | MQ7 | Menaquinone 7 | 2 |
| DB02043 | LHG | 1,2-Dipalmitoyl-Phosphatidyl-Glycerole | 1 |
| DB03279 | LMU | Dodecyl-Alpha-D-Maltoside | 1 |
| DB03619 | DXC | Deoxycholic acid | 1 |
| DB04464 | — | N-Formylmethionine | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| CUmetal | COPPER (II) ION | 375 |
| HEA | HEME-A | 323 |
| MGmetal | MAGNESIUM ION | 267 |
| CDL | CARDIOLIPIN | 214 |
| NAmetal | SODIUM ION | 170 |
| PGV | (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE | 167 |
| DMU | DECYL-BETA-D-MALTOPYRANOSIDE | 164 |
| PEK | (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE | 161 |
| CHD | CHOLIC ACID | 150 |
| PSC | (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE | 131 |
| TGL | TRISTEAROYLGLYCEROL | 131 |
| CAmetal | CALCIUM ION | 127 |
| HEM | PROTOPORPHYRIN IX CONTAINING FE | 110 |
| PER | PEROXIDE ION | 58 |
| HAS | HEME-AS | 54 |
| 3PE | 1,2-Distearoyl-sn-glycerophosphoethanolamine | 51 |
| FEmetal | FE (III) ION | 35 |
| CMO | CARBON MONOXIDE | 32 |
| PC1 | 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE | 31 |
| TRD | TRIDECANE | 28 |