F-group (family)

5044.1.1.1 Ycf9

Open in classification tree →Pfam PF01737 →

Ligands and drugs

412

Member domains

318

with ligand contacts (≤ 4 Å)

77.2% of members

232

with DrugDomain annotations

56.3% of members

226

with a DrugBank compound

54.9% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 5044.1.1.1 belongs to X-group 5044 PsbZ-like, which has 13 proteins with classified ligands. View its chemical profile →

DrugBank compounds

DrugBank	PDB ligand	Name	Domains
DB06755	BCR	Beta carotene	226
DB02133	CLA	Chlorophyll A	62
DB02043	LHG	1,2-Dipalmitoyl-Phosphatidyl-Glycerole	27
DB03193	STE	Stearic acid	14

Most frequently bound compounds

PDB ligand	Name	Domains in contact
CLA	CHLOROPHYLL A	310
BCR	BETA-CAROTENE	307
LMG	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE	132
LHG	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE	37
STE	STEARIC ACID	16
UNL	Unknown ligand	13
8CT	(6'R,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene	10
CHL	CHLOROPHYLL B	6
LMU	DODECYL-ALPHA-D-MALTOSIDE	3
WVN	1,3,3-trimethyl-2-[(1E,3E,5E,7E,9E,11E,13E,15E,17E)-3,7,12,16-tetramethyl-18-[(1R)-2,6,6-trimethylcyclohex-2-en-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohexene	3
A86	(3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'-yl acetate	2
DMU	DECYL-BETA-D-MALTOPYRANOSIDE	2
KC2	Chlorophyll c2	2
II0	(1~{R})-3,5,5-trimethyl-4-[(3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E})-3,7,12,16-tetramethyl-18-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol	1
LFA	EICOSANE	1
SQD	1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL	1