ECOD
F-group (family)

5054.1.1.8 Ion_trans_2

Open in classification tree →Pfam PF07885 →

Ligands and drugs

1,489
Member domains
880
with ligand contacts (≤ 4 Å)
59.1% of members
621
with DrugDomain annotations
41.7% of members
216
with a DrugBank compound
14.5% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 5054.1.1.8 belongs to X-group 5054 Voltage-gated ion channels, which binds 10.4 ligand superclasses per 20 proteins, broader than 97% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB03143F09Nonan-1-Ol35
DB00145GLYGlycine31
DB01851TBATetrabutylammonium Ion22
DB02210HEZHexane-1,6-Diol20
DB03338B7GHeptyl glucoside5
DB06731405Seproxetine5
DB08217MTNS-[(1-Hydroxy-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate5
DB00127SPMSpermine4
DB1685711AUndecanoic acid4
DB00141NAGN-Acetylglucosamine2
DB00308——2
DB00561——2
DB00908—Quinidine2
DB01159—Halothane2
DB02777PLCDiundecyl Phosphatidyl Choline2
DB03690PCW(Z,Z)-4-Hydroxy-N,N,N-Trimethyl-10-Oxo-7-[(1-Oxo-9-Octadecenyl)Oxy]-3,5,9-Trioxa-4-Phosphaheptacos-18-En-1-Aminium-4-Oxide2
DB00204——1
DB01346——1
DB04855——1

Most frequently bound compounds

PDB ligandNameDomains in contact
KmetalPOTASSIUM ION692
CDmetalCADMIUM ION68
Y01CHOLESTEROL HEMISUCCINATE67
CAmetalCALCIUM ION59
D12DODECANE51
R16HEXADECANE51
OCTN-OCTANE49
POV(2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate48
NAmetalSODIUM ION47
Q6FN-[(2,4-dichlorophenyl)methyl]-4-[(methylsulfonyl)amino]benzamide40
D10DECANE38
F09NONAN-1-OL35
GLYGLYCINE32
DGADIACYL GLYCEROL28
BAmetalBARIUM ION27
RBmetalRUBIDIUM ION25
EICLINOLEIC ACID24
TLmetalTHALLIUM (I) ION23
HEZHEXANE-1,6-DIOL20
PC11,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE20