T-group (topology)
5074.1.1 Bacterial light-harvesting complex subunits
Ligands and drugs
3,156
Member domains
2,936
with ligand contacts (≤ 4 Å)
93.0% of members
1,668
with DrugDomain annotations
52.9% of members
1,575
with a DrugBank compound
49.9% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 5074.1.1 belongs to X-group 5074 Bacterial light-harvesting complex subunits, which binds 5.0 ligand superclasses per 20 proteins, narrower than 84% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB01853 | BCL | Bacteriochlorophyll A | 1,560 |
| DB11231 | LYC | Lycopene | 138 |
| DB03429 | CDL | Tetrastearoyl cardiolipin | 101 |
| DB09270 | U10 | Ubidecarenone | 45 |
| DB01728 | PEF | 1,2-dihexadecanoyl-sn-glycero-3-phosphoethanolamine | 36 |
| DB07646 | DET | UNDECYLAMINE-N,N-DIMETHYL-N-OXIDE | 10 |
| DB04079 | HTO | Heptane-1,2,3-Triol | 8 |
| DB03317 | HEC | Ferroheme C | 3 |
| DB04327 | PEE | Phosphatidylethanolamine | 3 |
| DB08231 | MYR | Myristic acid | 2 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| BCL | BACTERIOCHLOROPHYLL A | 2,725 |
| CRT | SPIRILLOXANTHIN | 811 |
| SPO | SPHEROIDENE | 515 |
| V7N | (2~{E},4~{E},6~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{Z},24~{E},26~{E},28~{E})-23-methanoyl-31-methoxy-2,6,10,14,19,27,31-heptamethyl-dotriaconta-2,4,6,10,12,14,16,18,20,22,24,26,28-tridecaenoic acid | 480 |
| CAmetal | CALCIUM ION | 323 |
| PGV | (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE | 291 |
| CDL | CARDIOLIPIN | 149 |
| LYC | LYCOPENE | 144 |
| KGD | beta,psi-caroten-4-one | 132 |
| 0V9 | (19R,22S)-25-amino-22-hydroxy-22-oxido-16-oxo-17,21,23-trioxa-22lambda~5~-phosphapentacosan-19-yl (9Z)-hexadec-9-enoate | 130 |
| 07D | Trans-Geranyl BACTERIOCHLOROPHYLL A | 126 |
| A1EFU | (4~{E},16~{E},26~{E})-2-methoxy-2,6,10,14,19,23,27,31-octamethyl-dotriaconta-4,6,8,10,12,14,16,18,20,22,26,30-dodecaen-3-one | 102 |
| PEX | 1,2-DIDECANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE | 77 |
| PC1 | 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE | 72 |
| IRM | 1,2-Dihydro-psi,psi-caroten-1-ol | 63 |
| U4Z | gamma-Carotene | 63 |
| SP2 | 3,4-DIHYDROSPHEROIDENE | 54 |
| U10 | UBIQUINONE-10 | 52 |
| UNL | Unknown ligand | 52 |
| BCB | BACTERIOCHLOROPHYLL B | 51 |