5081 Rhomboid-like
Ligands and drugs
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
ClassyFire chemical superclasses of the ligands bound by this X-group's proteins, from DrugDomain annotations.
The raw number of superclasses rises with the number of proteins sampled; the per-20 value compares X-groups at equal depth.
| Superclass | Proteins | Expected | 0.25×observed / expected4× | Ratio | Significance |
|---|---|---|---|---|---|
| Lipids and lipid-like molecules | 4 | 0.6 | 7.29× | not tested | |
| Benzenoids | 2 | 0.4 | 5.55× | not tested | |
| Homogeneous non-metal compounds | 4 | 1.1 | 3.77× | not tested | |
| Organoheterocyclic compounds | 1 | 0.8 | 1.32× | not tested | |
| Organic acids and derivatives | 1 | 0.8 | 1.31× | not tested | |
| Organic oxygen compounds | 1 | 1.0 | 1.02× | not tested |
Unit: a protein (UniProt accession) with a ligand-binding domain in this X-group, counted once per superclass. Expected counts use each superclass's frequency across all ligand-binding X-groups; significance is Fisher's exact test with Benjamini–Hochberg correction. Buffers and crystallization additives are excluded. ECOD v295.2; the method follows the ECOD 2027 update, whose published figures used a slightly different artifact filter.
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB02451 | BNG | B-nonylglucoside | 18 |
| DB04491 | DFP | Diisopropylphosphono Group | 2 |
| DB08367 | PA6 | (R)-2-(FORMYLOXY)-3-(PHOSPHONOOXY)PROPYL PENTANOATE | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| BNG | nonyl beta-D-glucopyranoside | 18 |
| CL | CHLORIDE ION | 11 |
| DFP | DIISOPROPYL PHOSPHONATE | 2 |
| L6C | phenyl N-[(1R)-3-oxidanylidene-1-phenyl-propyl]carbamate | 2 |
| 3UB | propan-2-yl hydrogen (S)-[(1R)-1-{[(benzyloxy)carbonyl]amino}ethyl]phosphonate | 1 |
| 78C | CYCLOPENTYL 2-OXO-4-PHENYLAZETIDINE-1-CARBOXYLATE | 1 |
| ISM | 5-AMINO-2-(2-METHOXY-2-OXOETHYL)BENZOIC ACID | 1 |
| L61 | 2-methylpropyl N-[(1R)-3-oxidanylidene-1-phenyl-propyl]carbamate | 1 |
| L62 | cyclopentyl N-[(1R)-3-oxidanylidene-1-phenyl-propyl]carbamate | 1 |
| MC3 | 1,2-DIMYRISTOYL-RAC-GLYCERO-3-PHOSPHOCHOLINE | 1 |
| NAmetal | SODIUM ION | 1 |
| PA6 | (R)-2-(FORMYLOXY)-3-(PHOSPHONOOXY)PROPYL PENTANOATE | 1 |
| PGV | (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE | 1 |
| PQE | 3,6,12,15,18,21,24-HEPTAOXAHEXATRIACONTAN-1-OL | 1 |
| SV1 | 2-phenylethyl 2-(4-azanyl-2-methanoyl-phenyl)ethanoate | 1 |
| V87 | N-(4-phenylbutyl)formamide | 1 |