T-group (topology)
5090.1.1 Viral glycoprotein, central and dimerisation domains
Ligands and drugs
1,270
Member domains
322
with ligand contacts (≤ 4 Å)
25.4% of members
260
with DrugDomain annotations
20.5% of members
248
with a DrugBank compound
19.5% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 5090.1.1 belongs to X-group 5090 Viral glycoprotein, central and dimerisation domains-like, which binds 5.0 ligand superclasses per 20 proteins, narrower than 82% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB00141 | NAG | N-Acetylglucosamine | 218 |
| DB02306 | CPL | Palmitoyl-Linoleoyl Phosphatidylcholine | 2 |
| DB03350 | NCO | Cobalt hexammine ion | 1 |
| DB03740 | NDG | N-acetyl-alpha-D-glucosamine | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| NAG | 2-acetamido-2-deoxy-beta-D-glucopyranose | 279 |
| CAmetal | CALCIUM ION | 13 |
| NAmetal | SODIUM ION | 13 |
| CL | CHLORIDE ION | 9 |
| BR | BROMIDE ION | 6 |
| HOmetal | HOLMIUM ATOM | 6 |
| NGA | 2-acetamido-2-deoxy-beta-D-galactopyranose | 6 |
| CDmetal | CADMIUM ION | 5 |
| Kmetal | POTASSIUM ION | 4 |
| 43Y | [(2R)-3-[oxidanyl-[2-(trimethyl-$l^{4}-azanyl)ethoxy]phosphoryl]oxy-2-propanoyloxy-propyl] propanoate | 3 |
| CPL | 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE | 3 |
| 6OU | [(2~{R})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{Z})-octadec-9-enoate | 1 |
| NCO | COBALT HEXAMMINE(III) | 1 |
| NDG | 2-acetamido-2-deoxy-alpha-D-glucopyranose | 1 |
| OSmetal | OSMIUM ION | 1 |
| ZNmetal | ZINC ION | 1 |