T-group (topology)

569.1.1 Peridinin-chlorophyll protein

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Ligands and drugs

Member domains

with ligand contacts (≤ 4 Å)

71.4% of members

with DrugDomain annotations

46.4% of members

with a DrugBank compound

46.4% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 569.1.1 belongs to X-group 569 Peridinin-chlorophyll protein, which has 2 proteins with classified ligands. View its chemical profile →

DrugBank compounds

DrugBank	PDB ligand	Name	Domains
DB03001	PID	Peridinin	13
DB03426	DGD	Digalactosyl Diacyl Glycerol (Dgdg)	11
DB02133	CLA	Chlorophyll A	10
DB01853	BCL	Bacteriochlorophyll A	1
DB04506	CHL	Chlorophyll B	1

Most frequently bound compounds

PDB ligand	Name	Domains in contact
PID	PERIDININ	20
CLA	CHLOROPHYLL A	17
DGD	DIGALACTOSYL DIACYL GLYCEROL (DGDG)	11
CL	CHLORIDE ION	6
CDmetal	CADMIUM ION	5
Kmetal	POTASSIUM ION	5
W4O	[(2~{S})-3-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-[[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxymethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-[(6~{Z},9~{Z},12~{Z},15~{Z})-octadeca-6,9,12,15-tetraenoyl]oxy-propyl] (6~{Z},9~{Z},12~{Z},15~{Z})-octadeca-6,9,12,15-tetraenoate	4
NAmetal	SODIUM ION	3
W4I	[(2~{S})-3-[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-[[(2~{S},3~{R},4~{S},5~{R},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxymethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-2-[(6~{Z},9~{Z},12~{Z},15~{Z})-octadeca-6,9,12,15-tetraenoyl]oxy-propyl] (5~{Z},8~{Z},11~{Z},14~{Z},17~{Z})-icosa-5,8,11,14,17-pentaenoate	3
J7Z	(2S)-3-[(6-O-alpha-D-galactopyranosyl-beta-D-galactopyranosyl)oxy]-2-[(3Z,6Z,9Z,12Z,15Z)-octadeca-3,6,9,12,15-pentaenoyloxy]propyl (5Z,8Z,11Z,14Z,17Z)-icosa-5,8,11,14,17-pentaenoate	2
MGmetal	MAGNESIUM ION	2
BCL	BACTERIOCHLOROPHYLL A	1
CHL	CHLOROPHYLL B	1
CL7	CHLOROPHYLL D	1