T-group (topology)
6.1.1 beta-Trefoil
Ligands and drugs
4,440
Member domains
1,211
with ligand contacts (≤ 4 Å)
27.3% of members
1,004
with DrugDomain annotations
22.6% of members
753
with a DrugBank compound
17.0% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 6.1.1 belongs to X-group 6 beta-Trefoil, which binds 7.5 ligand superclasses per 20 proteins, narrower than 52% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB00141 | NAG | N-Acetylglucosamine | 73 |
| DB03401 | I3P | 1D-myo-inositol 1,4,5-trisphosphate | 21 |
| DB03975 | MBO | Mercuribenzoic Acid | 16 |
| DB03567 | A2G | alpha-N-Acetyl-D-galactosamine | 14 |
| DB04265 | SLB | N-acetyl-beta-neuraminic acid | 10 |
| DB04506 | CHL | Chlorophyll B | 9 |
| DB02133 | CLA | Chlorophyll A | 8 |
| DB03721 | SIA | N-acetyl-alpha-neuraminic acid | 8 |
| DB01862 | IPT | Isopropyl beta-D-thiogalactopyranoside | 7 |
| DB02379 | BGC | Beta-D-Glucose | 7 |
| DB04447 | DTT | 1,4-Dithiothreitol | 7 |
| DB02100 | AMG | Methyl alpha-galactoside | 5 |
| DB00133 | SER | Serine | 4 |
| DB02042 | 1PG | 2-(2-{2-[2-(2-Methoxy-Ethoxy)-Ethoxy]-Ethoxy}-Ethoxy)-Ethanol | 4 |
| DB00686 | — | — | 3 |
| DB03142 | AHR | Alpha-L-Arabinose | 3 |
| DB03345 | BME | Mercaptoethanol | 3 |
| DB08238 | N2M | 5-aminonaphthalene-2-sulfonic acid | 3 |
| DB13529 | DBX | Dobesilic acid | 3 |
| DB00145 | GLY | Glycine | 2 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| CL | CHLORIDE ION | 87 |
| I3P | D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE | 74 |
| CAmetal | CALCIUM ION | 66 |
| NAG | 2-acetamido-2-deoxy-beta-D-glucopyranose | 58 |
| GAL | beta-D-galactopyranose | 46 |
| NGA | 2-acetamido-2-deoxy-beta-D-galactopyranose | 36 |
| MGmetal | MAGNESIUM ION | 35 |
| NAmetal | SODIUM ION | 32 |
| A2G | 2-acetamido-2-deoxy-alpha-D-galactopyranose | 29 |
| BR | BROMIDE ION | 20 |
| MBO | MERCURIBENZOIC ACID | 16 |
| GLA | alpha-D-galactopyranose | 13 |
| C7V | 4-methyl-N-(1-{[4-(trifluoromethyl)phenyl]methyl}-1H-indazol-3-yl)-1,2-oxazole-5-carboxamide | 12 |
| HGmetal | MERCURY (II) ION | 12 |
| NImetal | NICKEL (II) ION | 11 |
| XYP | beta-D-xylopyranose | 11 |
| ZNmetal | ZINC ION | 11 |
| SLB | N-acetyl-beta-neuraminic acid | 10 |
| AMG | methyl alpha-D-galactopyranoside | 9 |
| CHL | CHLOROPHYLL B | 9 |