T-group (topology)
601.7.1 Nucleotidyltransferase substrate binding subunit/domain
Ligands and drugs
1,494
Member domains
110
with ligand contacts (≤ 4 Å)
7.4% of members
92
with DrugDomain annotations
6.2% of members
70
with a DrugBank compound
4.7% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 601.7.1 belongs to X-group 601 Four-helical up-and-down bundle, which binds 8.5 ligand superclasses per 20 proteins, broader than 67% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB00452 | NMY | Framycetin | 13 |
| DB00131 | AMP | Adenosine phosphate | 12 |
| DB02596 | APC | alpha,beta-Methyleneadenosine 5'-triphosphate | 6 |
| DB04160 | PPV | Pyrophosphoric acid | 6 |
| DB01172 | KAN | Kanamycin | 2 |
| DB04216 | QUE | Quercetin | 2 |
| DB00684 | TOY | Tobramycin | 1 |
| DB03900 | TBU | tert-butanol | 1 |
| DB04447 | DTT | 1,4-Dithiothreitol | 1 |
| DB12010 | — | Fostamatinib | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| MGmetal | MAGNESIUM ION | 26 |
| NMY | NEOMYCIN | 18 |
| AMP | ADENOSINE MONOPHOSPHATE | 10 |
| IOD | IODIDE ION | 10 |
| APC | DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER | 6 |
| CAmetal | CALCIUM ION | 6 |
| PPV | PYROPHOSPHATE | 6 |
| 2DA | 2',3'-DIDEOXYADENOSINE-5'-MONOPHOSPHATE | 4 |
| CL | CHLORIDE ION | 4 |
| NImetal | NICKEL (II) ION | 4 |
| 31J | 7-hydroxy-6-methoxy-3-[2-(2-methoxyethoxy)ethyl]-4,8-dimethyl-2H-chromen-2-one | 2 |
| ANP | PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | 2 |
| KAN | KANAMYCIN A | 2 |
| PUP | (2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-4-hydroxy-2-({[(S)-hydroxy{[(2R,3S,4S)-4-hydroxy-2-(hydroxymethyl)tetrahydrofuran-3-yl]oxy}phosphoryl]oxy}methyl)tetrahydrofuran-3-yl dihydrogen phosphate | 2 |
| QUE | 3,5,7,3',4'-PENTAHYDROXYFLAVONE | 2 |
| 31K | 2-methoxy-6-methyl-4-(4-methyl-3,4-dihydro-2H-1,4-benzoxazin-7-yl)phenol | 1 |
| 31L | 3-methoxy-5-methyl-4'-(morpholin-4-yl)biphenyl-4-ol | 1 |
| BME | BETA-MERCAPTOETHANOL | 1 |
| DTT | 2,3-DIHYDROXY-1,4-DITHIOBUTANE | 1 |
| NAmetal | SODIUM ION | 1 |