T-group (topology)
620.1.1 YfiT-like putative metal-dependent hydrolases
Ligands and drugs
232
Member domains
94
with ligand contacts (≤ 4 Å)
40.5% of members
67
with DrugDomain annotations
28.9% of members
36
with a DrugBank compound
15.5% of members
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
Chemical profiles are computed for X-groups. 620.1.1 belongs to X-group 620 YfiT-like putative metal-dependent hydrolases, which binds 4.8 ligand superclasses per 20 proteins, narrower than 85% of the 256 X-groups with enough proteins to compare. View its chemical profile →
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB03408 | 3GC | gamma-Glutamylcysteine | 2 |
| DB00133 | SER | Serine | 1 |
| DB00142 | GLU | Glutamic acid | 1 |
| DB00156 | THR | Threonine | 1 |
| DB00160 | ALA | Alanine | 1 |
| DB01694 | TAR | D-tartaric acid | 1 |
| DB03309 | NHE | N-cyclohexyltaurine | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| FEmetal | FE (III) ION | 38 |
| NImetal | NICKEL (II) ION | 21 |
| CL | CHLORIDE ION | 17 |
| AVJ | N,N,N-trimethyl-histidine | 16 |
| CYS | CYSTEINE | 6 |
| HIS | HISTIDINE | 6 |
| ZNmetal | ZINC ION | 5 |
| COmetal | COBALT (II) ION | 4 |
| MGmetal | MAGNESIUM ION | 4 |
| MNmetal | MANGANESE (II) ION | 4 |
| UCQ | (2~{S})-2-(dimethylamino)-3-(3-methylimidazol-4-yl)propanoic acid | 4 |
| AVI | N,N-dimethyl-L-histidine | 3 |
| NAmetal | SODIUM ION | 3 |
| 3GC | GAMMA-GLUTAMYLCYSTEINE | 2 |
| BR | BROMIDE ION | 2 |
| Kmetal | POTASSIUM ION | 2 |
| MRD | (4R)-2-METHYLPENTANE-2,4-DIOL | 2 |
| XGZ | Mycothiol | 2 |
| CAmetal | CALCIUM ION | 1 |
| GLU | GLUTAMIC ACID | 1 |