63 Mannose 6-phosphate receptor domain
Ligands and drugs
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
ClassyFire chemical superclasses of the ligands bound by this X-group's proteins, from DrugDomain annotations.
The raw number of superclasses rises with the number of proteins sampled; the per-20 value compares X-groups at equal depth.
| Superclass | Proteins | Expected | 0.25×observed / expected4× | Ratio | Significance |
|---|---|---|---|---|---|
| Organic oxygen compounds | 4 | 0.8 | 5.09× | not tested | |
| Lipids and lipid-like molecules | 1 | 0.4 | 2.28× | not tested | |
| Homogeneous non-metal compounds | 1 | 0.9 | 1.18× | not tested | |
| Homogeneous metal compounds | 2 | 1.9 | 1.03× | not tested |
Unit: a protein (UniProt accession) with a ligand-binding domain in this X-group, counted once per superclass. Expected counts use each superclass's frequency across all ligand-binding X-groups; significance is Fisher's exact test with Benjamini–Hochberg correction. Buffers and crystallization additives are excluded. ECOD v295.2; the method follows the ECOD 2027 update, whose published figures used a slightly different artifact filter.
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB00141 | NAG | N-Acetylglucosamine | 30 |
| DB02900 | — | alpha-D-mannose 6-phosphate | 17 |
| DB02755 | — | — | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| NAG | 2-acetamido-2-deoxy-beta-D-glucopyranose | 35 |
| MNmetal | MANGANESE (II) ION | 8 |
| M6D | 6-O-phosphono-beta-D-mannopyranose | 6 |
| CL | CHLORIDE ION | 4 |
| M6P | 6-O-phosphono-alpha-D-mannopyranose | 4 |
| 1GP | SN-GLYCEROL-1-PHOSPHATE | 2 |
| BR | BROMIDE ION | 2 |
| NAmetal | SODIUM ION | 2 |
| OSmetal | OSMIUM ION | 2 |
| MAN | alpha-D-mannopyranose | 1 |