ECOD
T-group (topology)

704.1.1 Coronavirus RNA-binding domain (N-terminal part of Pfam 00937)

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Ligands and drugs

208
Member domains
86
with ligand contacts (≤ 4 Å)
41.3% of members
50
with DrugDomain annotations
24.0% of members
31
with a DrugBank compound
14.9% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 704.1.1 belongs to X-group 704 Coronavirus RNA-binding domain (N-terminal part of Pfam 00937), which has 4 proteins with classified ligands. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB00131AMPAdenosine phosphate1
DB019725GPGuanosine-5'-Monophosphate1
DB03403C5PCytidine-5'-Monophosphate1
DB03685U5PUridine monophosphate1
DB08348P34N~2~,N~2~-DIMETHYL-N~1~-(6-OXO-5,6-DIHYDROPHENANTHRIDIN-2-YL)GLYCINAMIDE1
DB17038CQDNSC-6632841

Most frequently bound compounds

PDB ligandNameDomains in contact
ZNmetalZINC ION15
DJUN,N-dimethyl-1-(5-phenylmethoxy-1H-indol-3-yl)methanamine5
CLCHLORIDE ION3
U2H~{N}-methyl-~{N}-[(5-phenylmethoxy-1~{H}-indol-3-yl)methyl]propan-1-amine3
6576-(trifluoromethoxy)-1,3-benzothiazol-2-amine2
9F2Ceftriaxone2
A1H882-amino-1,3-benzothiazol-6-ol2
CDmetalCADMIUM ION2
DJO(phenylmethyl) (2S)-2-(hydroxymethyl)-2,3-dihydroindole-1-carboxylate2
EJC5-propoxy-1H-indole2
EY35-propan-2-yloxy-1H-indole2
EY65-(2-fluoranylethoxy)-1H-indole2
EY95-(2-methoxyethoxy)-1H-indole2
NAmetalSODIUM ION2
5GPGUANOSINE-5'-MONOPHOSPHATE1
AIC(2S,5R,6R)-6-{[(2R)-2-AMINO-2-PHENYLETHANOYL]AMINO}-3,3-DIMETHYL-7-OXO-4-THIA-1-AZABICYCLO[3.2.0]HEPTANE-2-CARBOXYLICACID1
AMPADENOSINE MONOPHOSPHATE1
C5PCYTIDINE-5'-MONOPHOSPHATE1
CQD6-chloro-7-{[2-(morpholin-4-yl)ethyl]amino}quinoline-5,8-dione1
IODIODIDE ION1