F-group (family)

7516.1.1.5 IspD

Open in classification tree →Pfam PF01128 →

Ligands and drugs

591

Member domains

with ligand contacts (≤ 4 Å)

14.6% of members

with DrugDomain annotations

12.5% of members

with a DrugBank compound

6.8% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 7516.1.1.5 belongs to X-group 7516 Nucleotide-diphospho-sugar transferases, which binds 8.0 ligand superclasses per 20 proteins, broader than 59% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBank	PDB ligand	Name	Domains
DB02431	CTP	Cytidine-5'-Triphosphate	14
DB03403	C5P	Cytidine-5'-Monophosphate	5
DB03687	CDM	4-(Cytidine 5'-diphospho)-2-C-methyl-D-erythritol	3
DB04447	DTT	1,4-Dithiothreitol	3
DB02159	PGR	(R)-Propylene glycol	2
DB03854	N2P	Cadaverine	2
DB04349	PGO	(S)-propane-1,2-diol	2
DB02994	CAD	Cacodylic acid	1

Most frequently bound compounds

PDB ligand	Name	Domains in contact
CTP	CYTIDINE-5'-TRIPHOSPHATE	20
CDmetal	CADMIUM ION	13
SCN	THIOCYANATE ION	13
Kmetal	POTASSIUM ION	8
CL	CHLORIDE ION	7
MGmetal	MAGNESIUM ION	7
V2V	CDP-ribitol	6
NAmetal	SODIUM ION	5
C5P	CYTIDINE-5'-MONOPHOSPHATE	4
CAmetal	CALCIUM ION	4
CUmetal	COPPER (II) ION	4
CDM	4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL	3
DTT	2,3-DIHYDROXY-1,4-DITHIOBUTANE	3
6BC	5-chloro-7-hydroxy-6-(phenylmethyl)pyrazolo[1,5-a]pyrimidine-3-carbonitrile	2
CDF	4-AMINO-1-{5-O-[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]-ALPHA-D-ARABINOFURANOSYL}PYRIMIDIN-2(1H)-ONE	2
N2P	PENTANE-1,5-DIAMINE	2
PGO	S-1,2-PROPANEDIOL	2
PGR	R-1,2-PROPANEDIOL	2
2JM	2-bromo-6-(3,4,5-tribromo-1H-pyrrol-2-yl)phenol	1
30A	6-BENZYL-5-CHLORO-7-HYDROXYPYRAZOLO[1,5-A]PYRIMIDINE-3-CARBOXYLIC ACID	1