ECOD
F-group (family)

7523.1.1.16 DctP

Open in classification tree →Pfam PF03480 →

Ligands and drugs

567
Member domains
486
with ligand contacts (≤ 4 Å)
85.7% of members
402
with DrugDomain annotations
70.9% of members
296
with a DrugBank compound
52.2% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 7523.1.1.16 belongs to X-group 7523 Periplasmic binding protein-like II, which binds 8.6 ligand superclasses per 20 proteins, broader than 69% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB04265SLBN-acetyl-beta-neuraminic acid28
DB03156BDPbeta-D-glucuronic acid25
DB00139SINSuccinic acid22
DB03066LACD-Lactic acid16
DB03652GTRbeta-D-Galactopyranuronic acid16
DB01930PAF2,4-Dihydroxy-3,3-Dimethyl-Butyrate14
DB00119PYRPyruvic acid11
DB04066HC4p-Coumaric acid11
DB01786DALD-Alanine10
DB03225DTRD-Tryptophan8
DB07950IACIndoleacetic acid8
DB191714CSEctoine8
DB02515G3Psn-glycerol 3-phosphate6
DB03511ADAalpha-D-galacturonic acid6
DB054836PCPicolinic acid6
DB043042UFL-Gluconic Acid5
DB01880DHC3,4-Dihydroxycinnamic Acid4
DB02024HCI3-phenylpropionic acid4
DB02280RMN(R)-Mandelic acid4
DB03088PCAPidolic acid4

Most frequently bound compounds

PDB ligandNameDomains in contact
CLCHLORIDE ION77
SLBN-acetyl-beta-neuraminic acid56
SINSUCCINIC ACID30
LMR(2S)-2-hydroxybutanedioic acid26
BDPbeta-D-glucopyranuronic acid25
ZNmetalZINC ION25
2Q2L-galactonic acid20
CAmetalCALCIUM ION19
MGmetalMAGNESIUM ION18
GTRbeta-D-galactopyranuronic acid16
LACLACTIC ACID16
PAFPANTOATE14
HC44'-HYDROXYCINNAMIC ACID12
PCAPYROGLUTAMIC ACID12
PYRPYRUVIC ACID12
DALD-ALANINE10
EAX(2R,3R)-2,3,4-trihydroxybutanoic acid10
NAmetalSODIUM ION10
3IO3-(1H-INDOL-3-YL)-2-OXOPROPANOIC ACID8
4CS(4S)-2-METHYL-1,4,5,6-TETRAHYDROPYRIMIDINE-4-CARBOXYLIC ACID8