F-group (family)

7523.1.1.3 SBP_bac_5

Open in classification tree →Pfam PF00496 →

Ligands and drugs

1,081

Member domains

420

with ligand contacts (≤ 4 Å)

38.9% of members

381

with DrugDomain annotations

35.2% of members

223

with a DrugBank compound

20.6% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 7523.1.1.3 belongs to X-group 7523 Periplasmic binding protein-like II, which binds 8.6 ligand superclasses per 20 proteins, broader than 69% of the 256 X-groups with enough proteins to compare. View its chemical profile →

DrugBank compounds

DrugBank	PDB ligand	Name	Domains
DB00117	HIS	Histidine	23
DB00974	EDT	Edetic acid	11
DB01822	DTD	(4R,5R)-1,2-dithiane-4,5-diol	8
DB00145	GLY	Glycine	6
DB00149	LEU	Leucine	6
DB08357	P4G	Diethylene glycol diethyl ether	6
DB00134	MET	Methionine	4
DB00120	PHE	Phenylalanine	2
DB00123	LYS	Lysine	2
DB00125	ARG	Arginine	2
DB00130	GLN	L-Glutamine	2
DB00142	GLU	Glutamic acid	2
DB00156	THR	Threonine	2
DB00160	ALA	Alanine	2
DB00161	VAL	Valine	2
DB03310	GDS	Glutathione disulfide	2
DB04265	SLB	N-acetyl-beta-neuraminic acid	2
DB04447	DTT	1,4-Dithiothreitol	2
DB11588	CMO	Carbon monoxide	2
DB01692	DTU	Dithioerythritol	1

Most frequently bound compounds

PDB ligand	Name	Domains in contact
CL	CHLORIDE ION	69
CAmetal	CALCIUM ION	40
IUM	URANYL (VI) ION	35
MGmetal	MAGNESIUM ION	27
HIS	HISTIDINE	24
U1metal	URANIUM ATOM	19
NImetal	NICKEL (II) ION	18
NAmetal	SODIUM ION	14
9YH	2-[2-[2-hydroxy-2-oxoethyl-[(3-methoxy-2-oxidanyl-phenyl)methyl]amino]ethyl-[(2-methylsulfanylphenyl)methyl]amino]ethanoic acid	13
ZNmetal	ZINC ION	12
BHZ	2-[2-[carboxymethyl(phenylmethyl)amino]ethyl-[(2-hydroxyphenyl)methyl]amino]ethanoic acid	11
EDT	{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID	11
8UX	(2~{S})-4-[[(2~{R})-3-(1~{H}-imidazol-4-yl)-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]-2-[[(2~{S})-1-oxidanyl-1-oxidanylidene-propan-2-yl]amino]butanoic acid	8
BHN	2-[2-[carboxymethyl-[(2-hydroxyphenyl)methyl]amino]ethyl-[(2-hydroxyphenyl)methyl]amino]ethanoic acid	8
BHR	2-[2-[carboxymethyl-[(2-hydroxyphenyl)methyl]amino]ethyl-[(2,3-dihydroxyphenyl)methyl]amino]ethanoic acid	8
BQZ	galactinol	8
DTD	DITHIANE DIOL	8
MHI	L-ALA-GAMMA-D-GLU-MESO-DIAMINOPIMELIC ACID	8
N72	(2~{R})-2-[[(3~{R},4~{R},5~{S})-3,4,5,6-tetrakis(oxidanyl)-2-oxidanylidene-hexyl]amino]pentanedioic acid	8
9YK	2-[2-[[2,3-bis(oxidanyl)phenyl]methyl-(2-hydroxy-2-oxoethyl)amino]ethyl-[(2-methylsulfanylphenyl)methyl]amino]ethanoic acid	6