7552 Amidase signature (AS) enzymes
Ligands and drugs
Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.
Chemical profile
ClassyFire chemical superclasses of the ligands bound by this X-group's proteins, from DrugDomain annotations.
The raw number of superclasses rises with the number of proteins sampled; the per-20 value compares X-groups at equal depth.
| Superclass | Proteins | Expected | 0.25×observed / expected4× | Ratio | Significance |
|---|---|---|---|---|---|
| Homogeneous metal compounds | 3 | 6.3 | 0.48× | q = 0.14 | |
| Benzenoids | 3 | 0.9 | 3.20× | not tested | |
| Organic acids and derivatives | 6 | 2.0 | 3.02× | not tested | |
| Organic nitrogen compounds | 1 | 0.4 | 2.45× | not tested | |
| Lipids and lipid-like molecules | 2 | 1.4 | 1.40× | not tested | |
| Organic oxygen compounds | 2 | 2.6 | 0.78× | not tested | |
| Homogeneous non-metal compounds | 2 | 2.8 | 0.72× | not tested | |
| Organoheterocyclic compounds | 1 | 2.0 | 0.51× | not tested |
Unit: a protein (UniProt accession) with a ligand-binding domain in this X-group, counted once per superclass. Expected counts use each superclass's frequency across all ligand-binding X-groups; significance is Fisher's exact test with Benjamini–Hochberg correction. Buffers and crystallization additives are excluded. ECOD v295.2; the method follows the ECOD 2027 update, whose published figures used a slightly different artifact filter.
DrugBank compounds
| DrugBank | PDB ligand | Name | Domains |
|---|---|---|---|
| DB00174 | ASN | Asparagine | 17 |
| DB02465 | MAY | Methoxy arachidonyl fluorophosphonate | 17 |
| DB00130 | GLN | L-Glutamine | 10 |
| DB02175 | MLA | Malonic acid | 6 |
| DB08400 | PIX | 4-(3-{[5-(trifluoromethyl)pyridin-2-yl]oxy}benzyl)piperidine-1-carboxylic acid | 5 |
| DB01694 | TAR | D-tartaric acid | 3 |
| DB06894 | 1DO | 1-Dodecanol | 3 |
| DB08385 | PF7 | 4-(quinolin-3-ylmethyl)piperidine-1-carboxylic acid | 3 |
| DB02649 | MLM | 3-Amino-3-Oxopropanoic Acid | 2 |
| DB00316 | TYL | Acetaminophen | 1 |
| DB00513 | ACA | Aminocaproic acid | 1 |
| DB00599 | — | — | 1 |
| DB02219 | CXS | 3-(cyclohexylamino)propanesulfonic acid | 1 |
| DB12010 | — | Fostamatinib | 1 |
| DB14011 | — | — | 1 |
Most frequently bound compounds
| PDB ligand | Name | Domains in contact |
|---|---|---|
| CL | CHLORIDE ION | 28 |
| ASN | ASPARAGINE | 17 |
| MAY | METHYL ARACHIDONYL FLUOROPHOSPHONATE | 16 |
| GJY | methyl-9Z,12Z,15Z-octadecatrienylphosphonofluoridate | 12 |
| GLN | GLUTAMINE | 10 |
| MLA | MALONIC ACID | 6 |
| X4X | (9R,10E,12Z)-9-hydroxy-N-(2-hydroxyethyl)octadeca-10,12-dienamide | 6 |
| OHN | N-3-OXO-DODECANOYL-L-HOMOSERINE LACTONE | 5 |
| A1D5H | 4-oxidanylbutyl ~{N}-(4-aminophenyl)carbamate | 4 |
| HDH | 4-oxidanylbenzohydrazide | 4 |
| JXV | (1R)-2-{[6-(2,3-dihydro-1,4-benzodioxin-6-yl)pyrimidin-4-yl]amino}-1-phenylethan-1-ol | 4 |
| OHO | CYCLOHEXANE AMINOCARBOXYLIC ACID | 4 |
| PIX | 4-(3-{[5-(trifluoromethyl)pyridin-2-yl]oxy}benzyl)piperidine-1-carboxylic acid | 4 |
| PMS | phenylmethanesulfonic acid | 4 |
| NAmetal | SODIUM ION | 3 |
| TAR | D(-)-TARTARIC ACID | 3 |
| 0LA | (2S)-2-(6-chloro-9H-carbazol-2-yl)propanoic acid | 2 |
| 17J | 4-(3-phenyl-1,2,4-thiadiazol-5-yl)-N-(pyridin-3-yl)piperazine-1-carboxamide | 2 |
| 1DO | 1-DODECANOL | 2 |
| A1IHK | 4-[(4-aminophenyl)methyl]aniline | 2 |