ECOD
F-group (family)

7588.1.1.1 LYTB

Open in classification tree →Pfam PF02401 →

Ligands and drugs

1,399
Member domains
180
with ligand contacts (≤ 4 Å)
12.9% of members
177
with DrugDomain annotations
12.7% of members
30
with a DrugBank compound
2.1% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

Chemical profiles are computed for X-groups. 7588.1.1.1 belongs to X-group 7588 NadA-like/4-hydroxy-3-methylbut-2-enyl diphosphate reductase, which has 5 proteins with classified ligands. View its chemical profile →

DrugBank compounds

DrugBankPDB ligandNameDomains
DB04714IPEISOPENTENYL PYROPHOSPHATE12
DB01785DMADimethylallyl Diphosphate6
DB01799EIP4-Hydroxy-3-Methyl Butyl Diphosphate6

Most frequently bound compounds

PDB ligandNameDomains in contact
SF4IRON/SULFUR CLUSTER105
F3SFE3-S4 CLUSTER75
H6P(2E)-4-hydroxy-3-methylbut-2-en-1-yl trihydrogen diphosphate30
0JX(3E)-4-hydroxybut-3-en-1-yl trihydrogen diphosphate12
10E(2E)-4-amino-3-methylbut-2-en-1-yl trihydrogen diphosphate12
10G(2E)-3-methyl-4-sulfanylbut-2-en-1-yl trihydrogen diphosphate12
IPE3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE12
POPPYROPHOSPHATE 2-12
0CGprop-2-yn-1-yl trihydrogen diphosphate6
0CH4-hydroxybutyl trihydrogen diphosphate6
0CJ4-oxopentyl trihydrogen diphosphate6
0CMbut-2-yn-1-yl trihydrogen diphosphate6
0CNbuta-2,3-dien-1-yl trihydrogen diphosphate6
0K24-oxobutyl trihydrogen diphosphate6
0O33-(hydroxymethyl)but-3-en-1-yl trihydrogen diphosphate6
10D(2E)-4-fluoro-3-methylbut-2-en-1-yl trihydrogen diphosphate6
2E4pyridin-3-ylmethyl trihydrogen diphosphate6
2E5pyridin-4-ylmethyl trihydrogen diphosphate6
2E6pyridin-2-ylmethyl trihydrogen diphosphate6
2E7(6-chloropyridin-3-yl)methyl trihydrogen diphosphate6