X-group (possible homology)

7601 Lactate racemase N-terminal domain

Ligands and drugs

222
Member domains
16
with ligand contacts (≤ 4 Å)
7.2% of members
12
with DrugDomain annotations
5.4% of members
8
with a DrugBank compound
3.6% of members

Aggregated over all current member domains of this group. Drug annotations come from DrugDomain; buffers and crystallization additives are excluded from the tables below.

Chemical profile

ClassyFire chemical superclasses of the ligands bound by this X-group's proteins, from DrugDomain annotations.

4
Proteins with classified ligands
3
Superclasses bound (of 23)
—
Superclasses per 20 proteins
fewer than 20 proteins: too few to compare at equal depth

The raw number of superclasses rises with the number of proteins sampled; the per-20 value compares X-groups at equal depth.

SuperclassProteinsExpected
0.25×observed / expected4×
RatioSignificance
Homogeneous non-metal compounds20.92.36×not tested
Homogeneous metal compounds31.91.55×not tested
Organic oxygen compounds10.81.27×not tested
enriched (q < 0.05)depleted (q < 0.05)not significantnot tested (expected < 5)

Unit: a protein (UniProt accession) with a ligand-binding domain in this X-group, counted once per superclass. Expected counts use each superclass's frequency across all ligand-binding X-groups; significance is Fisher's exact test with Benjamini–Hochberg correction. Buffers and crystallization additives are excluded. ECOD v295.2; the method follows the ECOD 2027 update, whose published figures used a slightly different artifact filter.

DrugBank compounds

No DrugBank compounds are annotated on this group's domains.

Most frequently bound compounds

PDB ligandNameDomains in contact
NImetalNICKEL (II) ION12
4EY3-methanethioyl-1-(5-O-phosphono-beta-D-ribofuranosyl)-5-(sulfanylcarbonyl)pyridin-1-ium10
ENJ(4S)-5-methanethioyl-1-(5-O-phosphono-beta-D-ribofuranosyl)-4-sulfo-1,4-dihydropyridine-3-carbothioic S-acid3
CLCHLORIDE ION2
LACLACTIC ACID2
MGmetalMAGNESIUM ION2
SO3SULFITE ION2
VADDEAMINOHYDROXYVALINE2
UCU(2R)-2-oxidanylbutanoic acid1