ECOD classification of AFDB 48 proteomes

Browse ECOD AF2 48 proteomes classification as tree or download distributable files. This provisional classification currently includes only proteins of the "48 protomes" predicted by AlphaFold2 and distributed by UniProt. These proteomes include eukaryotes, bacteria, and archaea. They are split between 16 model organisms and 32 global health organisms.

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ECOD is a hierarchical classification of protein domains according to their evolutionary relationships. This database contains our classification of structure predictions from 48 proteomes from AlphaFold Database database currently classified in this provisional classification database.

Please cite the following reference:

H. Cheng, R. D. Schaeffer, Y. Liao, L. N. Kinch, J. Pei, S. Shi, B. H. Kim, N. V. Grishin. (2014) ECOD: An evolutionary classification of protein domains. PLoS Comput Biol 10(12): e1003926.

H. Cheng, Y. Liao, R. D. Schaeffer, N. V. Grishin. (2015) Manual classification strategies in the ECOD database. Proteins 83(7): 1238-1251.

ECOD statistics
491,781Predicted structures
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