Provisional ECOD human classification
Browse ECOD human classification as tree or download distributable files. This provisional classification currently includes only human proteins predicted by AlphaFold2 and distributed by UniProt.
ECOD is a hierarchical classification of protein domains according to their evolutionary relationships. This database contains our provisional classification of predictions of the human proteome from AlphaFold Database database currently classified in this provisional classification database. Further classification of highly accurate protein structure predictions will be forthcoming.
Please cite the following reference:
H. Cheng, R. D. Schaeffer, Y. Liao, L. N. Kinch, J. Pei, S. Shi, B. H. Kim, N. V. Grishin. (2014) ECOD: An evolutionary classification of protein domains. PLoS Comput Biol 10(12): e1003926.
H. Cheng, Y. Liao, R. D. Schaeffer, N. V. Grishin. (2015) Manual classification strategies in the ECOD database. Proteins 83(7): 1238-1251.
Schaeffer, R. D., Q. Cong, J. Pei, L. N. Kinch. In Preparation. Classification of domains in predicted structures of the human proteome.
| ECOD statistics | |
|---|---|
| 18,037 | Predicted structures |
| 47,576 | Domains |
| 1,159 | X-groups |
| 1,661 | H-groups |
Feel free to email us if you have any questions or suggestions.