ECOD classification of Salmonella enterica pangenome
Browse ECOD AF2 S. enterica classification as tree or download distributable files. This classification currently includes only proteins of S. enterica and associated strains, it is distinct from our other classifications of S. enterica.
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ECOD is a hierarchical classification of protein domains according to their evolutionary relationships. This database contains our classification of structure predictions from S. enterica pathogenic strains from AlphaFold Database as well as our own models of proteins from previously unmodelled pathogenic strains.
Please cite the following reference:
K. E. Medvedev, J. Zhang, R. D. Schaeffer, L. N. Kinch, Q. Cong, N. V. Grishin (2024). Structure classification of the proteins from Salmonella enterica pangenome revealed novel potential pathogenicity islands. Scientific Reports. 14(12260).
H. Cheng, R. D. Schaeffer, Y. Liao, L. N. Kinch, J. Pei, S. Shi, B. H. Kim, N. V. Grishin. (2014) ECOD: An evolutionary classification of protein domains. PLoS Comput Biol 10(12): e1003926.
H. Cheng, Y. Liao, R. D. Schaeffer, N. V. Grishin. (2015) Manual classification strategies in the ECOD database. Proteins 83(7): 1238-1251.
| ECOD statistics | |
|---|---|
| 10,109 | Predicted structures |
| 17,234 | Domains |
| 883 | X-groups |
| 1,357 | H-groups |
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