ECODEvolutionary Classification of Protein Domains

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PDB 1NVP

X-RAY DIFFRACTION2.10 Å6 chains6 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain ATATA box binding proteinview chain

2 domains

e1nvpA1(A:159-252)e1nvpA2(A:256-338)

Chain BTranscription initiation factor IIA alpha chainview chain

1 domain

e1nvpB1(B:9-51)

Chain CTranscription initiation factor IIA beta chainview chain

1 domain

e1nvpC1(C:330-376)

Chain DTranscription initiation factor IIA gamma chainview chain

2 domains

e1nvpD1(D:54-99)e1nvpD2(D:3-53)

All Domains (6)

#	Chain	Domain ID	Range	Family	Classification
1	A	e1nvpA1	A:159-252	TBP	331 → 331.1 → 331.1.1
2	A	e1nvpA2	A:256-338	TBP	331 → 331.1 → 331.1.1
3	B	e1nvpB1	B:9-51	TFIIA	104 → 104.1 → 104.1.1
4	C	e1nvpC1	C:330-376	TFIIA	74 → 74.1 → 74.1.1
5	D	e1nvpD1	D:54-99	TFIIA_gamma_C	74 → 74.1 → 74.1.1
6	D	e1nvpD2	D:3-53	TFIIA_gamma_N	104 → 104.1 → 104.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors