ECODEvolutionary Classification of Protein Domains

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PDB 1V54

X-RAY DIFFRACTION1.80 Å26 chains28 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain ACytochrome c oxidase polypeptide Iview chain

1 domain

e1v54A1(A:1-514)

Chain BCytochrome c oxidase polypeptide IIview chain

2 domains

e1v54B1(B:91-227)e1v54B2(B:1-90)

Chain CCytochrome c oxidase polypeptide IIIview chain

1 domain

e1v54C1(C:3-261)

Chain DCytochrome c oxidase subunit IV isoform 1view chain

1 domain

e1v54D1(D:4-147)

Chain ECytochrome c oxidase polypeptide Vaview chain

1 domain

e1v54E1(E:5-109)

Chain FCytochrome c oxidase polypeptide Vbview chain

1 domain

e1v54F1(F:1-98)

Chain GCytochrome c oxidase polypeptide VIa-heartview chain

1 domain

e1v54G1(G:1-84)

Chain HCytochrome c oxidase polypeptide VIbview chain

1 domain

e1v54H1(H:7-85)

Chain ICytochrome c oxidase polypeptide VIcview chain

1 domain

e1v54I1(I:1-73)

Chain JCytochrome c oxidase polypeptide VIIa-heartview chain

1 domain

e1v54J1(J:1-58)

Chain KCytochrome c oxidase polypeptide VIIbview chain

1 domain

e1v54K1(K:6-54)

Chain LCytochrome c oxidase polypeptide VIIcview chain

1 domain

e1v54L1(L:2-47)

Chain MCytochrome c oxidase polypeptide VIII-heartview chain

1 domain

e1v54M1(M:1-43)

Chain NCytochrome c oxidase polypeptide Iview chain

1 domain

e1v54N1(N:1-514)

Chain OCytochrome c oxidase polypeptide IIview chain

2 domains

e1v54O1(O:91-227)e1v54O2(O:1-90)

Chain PCytochrome c oxidase polypeptide IIIview chain

1 domain

e1v54P1(P:3-261)

Chain QCytochrome c oxidase subunit IV isoform 1view chain

1 domain

e1v54Q1(Q:4-147)

Chain RCytochrome c oxidase polypeptide Vaview chain

1 domain

e1v54R1(R:5-109)

Chain SCytochrome c oxidase polypeptide Vbview chain

1 domain

e1v54S1(S:1-98)

Chain TCytochrome c oxidase polypeptide VIa-heartview chain

1 domain

e1v54T1(T:1-84)

Chain UCytochrome c oxidase polypeptide VIbview chain

1 domain

e1v54U1(U:7-85)

Chain VCytochrome c oxidase polypeptide VIcview chain

1 domain

e1v54V1(V:1-73)

Chain WCytochrome c oxidase polypeptide VIIa-heartview chain

1 domain

e1v54W1(W:1-58)

Chain XCytochrome c oxidase polypeptide VIIbview chain

1 domain

e1v54X1(X:6-54)

Chain YCytochrome c oxidase polypeptide VIIcview chain

1 domain

e1v54Y1(Y:2-47)

Chain ZCytochrome c oxidase polypeptide VIII-heartview chain

1 domain

e1v54Z1(Z:1-43)

All Domains (28)

#	Chain	Domain ID	Range	Family	Classification
1	A	e1v54A1	A:1-514	COX1	5038 → 5038.1 → 5038.1.1
2	B	e1v54B1	B:91-227	COX2	3156 → 3156.1 → 3156.1.1
3	B	e1v54B2	B:1-90	COX2_TM	5040 → 5040.1 → 5040.1.1
4	C	e1v54C1	C:3-261	COX3	5039 → 5039.1 → 5039.1.1
5	D	e1v54D1	D:4-147	COX4	5003 → 5003.1 → 5003.1.1
6	E	e1v54E1	E:5-109	COX5A	109 → 109.7 → 109.7.1
7	F	e1v54F1	F:1-98	COX5B	375 → 375.1 → 375.1.8
8	G	e1v54G1	G:1-84	COX6A	5004 → 5004.1 → 5004.1.1
9	H	e1v54H1	H:7-85	COX6B	540 → 540.1 → 540.1.1
10	I	e1v54I1	I:1-73	COX6C	5005 → 5005.1 → 5005.1.1
11	J	e1v54J1	J:1-58	COX7a	5006 → 5006.1 → 5006.1.1
12	K	e1v54K1	K:6-54	COX7B	5007 → 5007.1 → 5007.1.1
13	L	e1v54L1	L:2-47	COX7C	5008 → 5008.1 → 5008.1.1
14	M	e1v54M1	M:1-43	COX8	5009 → 5009.1 → 5009.1.1
15	N	e1v54N1	N:1-514	COX1	5038 → 5038.1 → 5038.1.1
16	O	e1v54O1	O:91-227	COX2	3156 → 3156.1 → 3156.1.1
17	O	e1v54O2	O:1-90	COX2_TM	5040 → 5040.1 → 5040.1.1
18	P	e1v54P1	P:3-261	COX3	5039 → 5039.1 → 5039.1.1
19	Q	e1v54Q1	Q:4-147	COX4	5003 → 5003.1 → 5003.1.1
20	R	e1v54R1	R:5-109	COX5A	109 → 109.7 → 109.7.1
21	S	e1v54S1	S:1-98	COX5B	375 → 375.1 → 375.1.8
22	T	e1v54T1	T:1-84	COX6A	5004 → 5004.1 → 5004.1.1
23	U	e1v54U1	U:7-85	COX6B	540 → 540.1 → 540.1.1
24	V	e1v54V1	V:1-73	COX6C	5005 → 5005.1 → 5005.1.1
25	W	e1v54W1	W:1-58	COX7a	5006 → 5006.1 → 5006.1.1
26	X	e1v54X1	X:6-54	COX7B	5007 → 5007.1 → 5007.1.1
27	Y	e1v54Y1	Y:2-47	COX7C	5008 → 5008.1 → 5008.1.1
28	Z	e1v54Z1	Z:1-43	COX8	5009 → 5009.1 → 5009.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors