ECODEvolutionary Classification of Protein Domains

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PDB 1VPN

X-RAY DIFFRACTION2.00 Å5 chains5 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain APOLYOMAVIRUS VP1 PENTAMERview chain

1 domain

e1vpnA1(A:32-316)

Chain BPOLYOMAVIRUS VP1 PENTAMERview chain

1 domain

e1vpnB1(B:32-316)

Chain CPOLYOMAVIRUS VP1 PENTAMERview chain

1 domain

e1vpnC1(C:32-316)

Chain DPOLYOMAVIRUS VP1 PENTAMERview chain

1 domain

e1vpnD1(D:32-316)

Chain EPOLYOMAVIRUS VP1 PENTAMERview chain

1 domain

e1vpnE1(E:32-316)

All Domains (5)

#	Chain	Domain ID	Range	Family	Classification
1	A	e1vpnA1	A:32-316	Polyoma_coat	10 → 10.2 → 10.2.1
2	B	e1vpnB1	B:32-316	Polyoma_coat	10 → 10.2 → 10.2.1
3	C	e1vpnC1	C:32-316	Polyoma_coat	10 → 10.2 → 10.2.1
4	D	e1vpnD1	D:32-316	Polyoma_coat	10 → 10.2 → 10.2.1
5	E	e1vpnE1	E:32-316	Polyoma_coat	10 → 10.2 → 10.2.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors