Home/PDB

PDB 1VY4

X-RAY DIFFRACTION2.60 Å112 chains110 ECOD domains
View in RCSB PDB

3D Structure(domains colored, ligands/nucleic acids shown)

Loading viewer...

Domains by Chain

Chain AB30S ribosomal protein S2view chain
1 domain
Chain AC30S ribosomal protein S3view chain
2 domains
Chain AD30S ribosomal protein S4view chain
1 domain
Chain AE30S ribosomal protein S5view chain
2 domains
Chain AF30S ribosomal protein S6view chain
1 domain
Chain AG30S ribosomal protein S7view chain
1 domain
Chain AH30S ribosomal protein S8view chain
2 domains
Chain AI30S ribosomal protein S9view chain
1 domain
Chain AJ30S ribosomal protein S10view chain
1 domain
Chain AK30S ribosomal protein S11view chain
1 domain
Chain AL30S ribosomal protein S12view chain
1 domain
Chain AM30S ribosomal protein S13view chain
1 domain
Chain AN30S ribosomal protein S14 type Zview chain
1 domain
Chain AO30S ribosomal protein S15view chain
1 domain
Chain AP30S ribosomal protein S16view chain
1 domain
Chain AQ30S ribosomal protein S17view chain
1 domain
Chain AR30S ribosomal protein S18view chain
1 domain
Chain AS30S ribosomal protein S19view chain
1 domain
Chain AT30S ribosomal protein S20view chain
1 domain
Chain B050S ribosomal protein L27view chain
1 domain
Chain B150S ribosomal protein L28view chain
1 domain
Chain B250S ribosomal protein L29view chain
1 domain
Chain B350S ribosomal protein L30view chain
1 domain
Chain B450S ribosomal protein L31view chain
1 domain
Chain B550S ribosomal protein L32view chain
1 domain
Chain B650S ribosomal protein L33view chain
1 domain
Chain B750S ribosomal protein L34view chain
1 domain
Chain B850S ribosomal protein L35view chain
1 domain
Chain B950S ribosomal protein L36view chain
1 domain
Chain BD50S ribosomal protein L2view chain
2 domains
Chain BE50S ribosomal protein L3view chain
1 domain
Chain BF50S ribosomal protein L4view chain
1 domain
Chain BG50S ribosomal protein L5view chain
1 domain
Chain BH50S ribosomal protein L6view chain
2 domains
Chain BI50S ribosomal protein L9view chain
2 domains
Chain BN50S ribosomal protein L13view chain
1 domain
Chain BO50S ribosomal protein L14view chain
1 domain
Chain BP50S ribosomal protein L15view chain
1 domain
Chain BQ50S ribosomal protein L16view chain
1 domain
Chain BR50S ribosomal protein L17view chain
1 domain
Chain BS50S ribosomal protein L18view chain
1 domain
Chain BT50S ribosomal protein L19view chain
1 domain
Chain BU50S ribosomal protein L20view chain
1 domain
Chain BV50S ribosomal protein L21view chain
1 domain
Chain BW50S ribosomal protein L22view chain
1 domain
Chain BX50S ribosomal protein L23view chain
1 domain
Chain BY50S ribosomal protein L24view chain
1 domain
Chain BZ50S ribosomal protein L25view chain
2 domains
Chain CB30S ribosomal protein S2view chain
1 domain
Chain CC30S ribosomal protein S3view chain
2 domains
Chain CD30S ribosomal protein S4view chain
1 domain
Chain CE30S ribosomal protein S5view chain
2 domains
Chain CF30S ribosomal protein S6view chain
1 domain
Chain CG30S ribosomal protein S7view chain
1 domain
Chain CH30S ribosomal protein S8view chain
2 domains
Chain CI30S ribosomal protein S9view chain
1 domain
Chain CJ30S ribosomal protein S10view chain
1 domain
Chain CK30S ribosomal protein S11view chain
1 domain
Chain CL30S ribosomal protein S12view chain
1 domain
Chain CM30S ribosomal protein S13view chain
1 domain
Chain CN30S ribosomal protein S14 type Zview chain
1 domain
Chain CO30S ribosomal protein S15view chain
1 domain
Chain CP30S ribosomal protein S16view chain
1 domain
Chain CQ30S ribosomal protein S17view chain
1 domain
Chain CR30S ribosomal protein S18view chain
1 domain
Chain CS30S ribosomal protein S19view chain
1 domain
Chain CT30S ribosomal protein S20view chain
1 domain
Chain D050S ribosomal protein L27view chain
1 domain
Chain D150S ribosomal protein L28view chain
1 domain
Chain D250S ribosomal protein L29view chain
1 domain
Chain D350S ribosomal protein L30view chain
1 domain
Chain D450S ribosomal protein L31view chain
1 domain
Chain D550S ribosomal protein L32view chain
1 domain
Chain D650S ribosomal protein L33view chain
1 domain
Chain D750S ribosomal protein L34view chain
1 domain
Chain D850S ribosomal protein L35view chain
1 domain
Chain D950S ribosomal protein L36view chain
1 domain
Chain DD50S ribosomal protein L2view chain
2 domains
Chain DE50S ribosomal protein L3view chain
1 domain
Chain DF50S ribosomal protein L4view chain
1 domain
Chain DG50S ribosomal protein L5view chain
1 domain
Chain DH50S ribosomal protein L6view chain
2 domains
Chain DI50S ribosomal protein L9view chain
2 domains
Chain DN50S ribosomal protein L13view chain
1 domain
Chain DO50S ribosomal protein L14view chain
1 domain
Chain DP50S ribosomal protein L15view chain
1 domain
Chain DQ50S ribosomal protein L16view chain
1 domain
Chain DR50S ribosomal protein L17view chain
1 domain
Chain DS50S ribosomal protein L18view chain
1 domain
Chain DT50S ribosomal protein L19view chain
1 domain
Chain DU50S ribosomal protein L20view chain
1 domain
Chain DV50S ribosomal protein L21view chain
1 domain
Chain DW50S ribosomal protein L22view chain
1 domain
Chain DX50S ribosomal protein L23view chain
1 domain
Chain DY50S ribosomal protein L24view chain
1 domain
Chain DZ50S ribosomal protein L25view chain
2 domains

All Domains (110)

#ChainDomain IDRangeFamilyClassification
1ABe1vy4AB1AB:7-127,AB:157-237Ribosomal_S22007 → 2007.6 → 2007.6.1
2ACe1vy4AC1AC:107-207Ribosomal_S3_C230 → 230.2 → 230.2.1
3ACe1vy4AC2AC:2-106KH_2327 → 327.11 → 327.11.1
4ADe1vy4AD1AD:2-209Ribosomal_S4,S4221 → 221.1 → 221.1.2
5AEe1vy4AE1AE:73-152Ribosomal_S5_C212 → 212.1 → 212.1.1
6AEe1vy4AE2AE:5-72Ribosomal_S5330 → 330.1 → 330.1.1
7AFe1vy4AF1AF:1-100Ribosomal_S6304 → 304.12 → 304.12.1
8AGe1vy4AG1AG:2-156Ribosomal_S7167 → 167.1 → 167.1.1
9AHe1vy4AH1AH:2-66Ribosomal_S8320 → 320.2 → 320.2.1
10AHe1vy4AH2AH:67-138Ribosomal_S84988 → 4988.1 → 4988.1.1
11AIe1vy4AI1AI:2-128Ribosomal_S9212 → 212.1 → 212.1.1
12AJe1vy4AJ1AJ:4-100Ribosomal_S10304 → 304.44 → 304.44.1
13AKe1vy4AK1AK:13-126Ribosomal_S112484 → 2484.1 → 2484.1.1
14ALe1vy4AL1AL:5-126Ribosom_S12_S232 → 2.1 → 2.1.1
15AMe1vy4AM1AM:2-124Ribosomal_S13102 → 102.2 → 102.2.1
16ANe1vy4AN1AN:2-61Ribosomal_S14377 → 377.1 → 377.1.1
17AOe1vy4AO1AO:2-89Ribosomal_S15616 → 616.1 → 616.1.1
18APe1vy4AP1AP:1-82Ribosomal_S16837 → 837.1 → 837.1.1
19AQe1vy4AQ1AQ:2-78Ribosomal_S172 → 2.1 → 2.1.1
20ARe1vy4AR1AR:20-87Ribosomal_S18101 → 101.1 → 101.1.1
21ASe1vy4AS1AS:2-85Ribosomal_S19838 → 838.1 → 838.1.1
22ATe1vy4AT1AT:8-103Ribosomal_S20p604 → 604.9 → 604.9.1
23B0e1vy4B01B0:2-84Ribosomal_L27325 → 325.1 → 325.1.8
24B1e1vy4B11B1:2-98Ribosomal_L284232 → 4232.1 → 4232.1.1
25B2e1vy4B21B2:1-70Ribosomal_L29192 → 192.4 → 192.4.1
26B3e1vy4B31B3:2-60Ribosomal_L30887 → 887.1 → 887.1.1
27B4e1vy4B41B4:1-69Ribosomal_L314987 → 4987.1 → 4987.1.1
28B5e1vy4B51B5:2-60Ribosomal_L32p375 → 375.1 → 375.1.1
29B6e1vy4B61B6:2-54Ribosomal_L33375 → 375.1 → 375.1.1
30B7e1vy4B71B7:1-48Ribosomal_L343074 → 3074.1 → 3074.1.1
31B8e1vy4B81B8:2-65Ribosomal_L35p4281 → 4281.1 → 4281.1.1
32B9e1vy4B91B9:1-37Ribosomal_L36919 → 919.1 → 919.1.1
33BDe1vy4BD1BD:127-276Ribosomal_L2_C4 → 4.1 → 4.1.1
34BDe1vy4BD2BD:2-126Ribosomal_L22 → 2.1 → 2.1.1
35BEe1vy4BE1BE:1-204Ribosomal_L31 → 1.1 → 1.1.7
36BFe1vy4BF1BF:6-208Ribosomal_L47559 → 7559.1 → 7559.1.1
37BGe1vy4BG1BG:2-182Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
38BHe1vy4BH1BH:83-175Ribosomal_L6318 → 318.1 → 318.1.1
39BHe1vy4BH2BH:2-82Ribosomal_L6318 → 318.1 → 318.1.1
40BIe1vy4BI1BI:1-53Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
41BIe1vy4BI2BI:54-146Ribosomal_L9_C523 → 523.1 → 523.1.1
42BNe1vy4BN1BN:1-140Ribosomal_L132490 → 2490.2 → 2490.2.1
43BOe1vy4BO1BO:1-122Ribosomal_L143174 → 3174.1 → 3174.1.1
44BPe1vy4BP1BP:1-149Ribosomal_L27A, Ribosomal_uL15_N2490 → 2490.3 → 2490.3.1
45BQe1vy4BQ1BQ:1-141Ribosomal_L16325 → 325.1 → 325.1.5
46BRe1vy4BR1BR:1-118Ribosomal_L17218 → 218.3 → 218.3.1
47BSe1vy4BS1BS:3-112Ribosomal_L18p2484 → 2484.1 → 2484.1.1
48BTe1vy4BT1BT:1-131Ribosomal_L194 → 4.1 → 4.1.1
49BUe1vy4BU1BU:2-117Ribosomal_L20143 → 143.2 → 143.2.1
50BVe1vy4BV1BV:1-101Ribosomal_L21p4186 → 4186.1 → 4186.1.1
51BWe1vy4BW1BW:1-112Ribosomal_L22218 → 218.2 → 218.2.1
52BXe1vy4BX1BX:1-95Ribosomal_L23304 → 304.109 → 304.109.1
53BYe1vy4BY1BY:1-107KOW,ribosomal_L244 → 4.1 → 4.1.1
54BZe1vy4BZ1BZ:93-171Ribosomal_TL5_C240 → 240.1 → 240.1.1
55BZe1vy4BZ2BZ:1-92Ribosomal_L25p239 → 239.1 → 239.1.1
56CBe1vy4CB1CB:7-127,CB:157-237Ribosomal_S22007 → 2007.6 → 2007.6.1
57CCe1vy4CC1CC:107-207Ribosomal_S3_C230 → 230.2 → 230.2.1
58CCe1vy4CC2CC:2-106KH_2327 → 327.11 → 327.11.1
59CDe1vy4CD1CD:2-209Ribosomal_S4,S4221 → 221.1 → 221.1.2
60CEe1vy4CE1CE:73-152Ribosomal_S5_C212 → 212.1 → 212.1.1
61CEe1vy4CE2CE:5-72Ribosomal_S5330 → 330.1 → 330.1.1
62CFe1vy4CF1CF:1-100Ribosomal_S6304 → 304.12 → 304.12.1
63CGe1vy4CG1CG:2-156Ribosomal_S7167 → 167.1 → 167.1.1
64CHe1vy4CH1CH:2-66Ribosomal_S8320 → 320.2 → 320.2.1
65CHe1vy4CH2CH:67-138Ribosomal_S84988 → 4988.1 → 4988.1.1
66CIe1vy4CI1CI:2-128Ribosomal_S9212 → 212.1 → 212.1.1
67CJe1vy4CJ1CJ:5-100Ribosomal_S10304 → 304.44 → 304.44.1
68CKe1vy4CK1CK:13-126Ribosomal_S112484 → 2484.1 → 2484.1.1
69CLe1vy4CL1CL:5-126Ribosom_S12_S232 → 2.1 → 2.1.1
70CMe1vy4CM1CM:3-124Ribosomal_S13102 → 102.2 → 102.2.1
71CNe1vy4CN1CN:2-61Ribosomal_S14377 → 377.1 → 377.1.1
72COe1vy4CO1CO:2-89Ribosomal_S15616 → 616.1 → 616.1.1
73CPe1vy4CP1CP:1-82Ribosomal_S16837 → 837.1 → 837.1.1
74CQe1vy4CQ1CQ:2-78Ribosomal_S172 → 2.1 → 2.1.1
75CRe1vy4CR1CR:20-87Ribosomal_S18101 → 101.1 → 101.1.1
76CSe1vy4CS1CS:2-84Ribosomal_S19838 → 838.1 → 838.1.1
77CTe1vy4CT1CT:8-103Ribosomal_S20p604 → 604.9 → 604.9.1
78D0e1vy4D01D0:2-84Ribosomal_L27325 → 325.1 → 325.1.8
79D1e1vy4D11D1:2-98Ribosomal_L284232 → 4232.1 → 4232.1.1
80D2e1vy4D21D2:1-70Ribosomal_L29192 → 192.4 → 192.4.1
81D3e1vy4D31D3:2-60Ribosomal_L30887 → 887.1 → 887.1.1
82D4e1vy4D41D4:1-69Ribosomal_L314987 → 4987.1 → 4987.1.1
83D5e1vy4D51D5:2-60Ribosomal_L32p375 → 375.1 → 375.1.1
84D6e1vy4D61D6:2-54Ribosomal_L33375 → 375.1 → 375.1.1
85D7e1vy4D71D7:1-48Ribosomal_L343074 → 3074.1 → 3074.1.1
86D8e1vy4D81D8:2-65Ribosomal_L35p4281 → 4281.1 → 4281.1.1
87D9e1vy4D91D9:1-37Ribosomal_L36919 → 919.1 → 919.1.1
88DDe1vy4DD1DD:127-276Ribosomal_L2_C4 → 4.1 → 4.1.1
89DDe1vy4DD2DD:2-126Ribosomal_L22 → 2.1 → 2.1.1
90DEe1vy4DE1DE:1-204Ribosomal_L31 → 1.1 → 1.1.7
91DFe1vy4DF1DF:6-208Ribosomal_L47559 → 7559.1 → 7559.1.1
92DGe1vy4DG1DG:2-182Ribosomal_L5,Ribosomal_L5_C882 → 882.1 → 882.1.1
93DHe1vy4DH1DH:83-175Ribosomal_L6318 → 318.1 → 318.1.1
94DHe1vy4DH2DH:2-82Ribosomal_L6318 → 318.1 → 318.1.1
95DIe1vy4DI1DI:1-53Ribosomal_L9_N4076 → 4076.1 → 4076.1.1
96DIe1vy4DI2DI:54-146Ribosomal_L9_C523 → 523.1 → 523.1.1
97DNe1vy4DN1DN:1-140Ribosomal_L132490 → 2490.2 → 2490.2.1
98DOe1vy4DO1DO:1-122Ribosomal_L143174 → 3174.1 → 3174.1.1
99DPe1vy4DP1DP:1-149Ribosomal_L27A, Ribosomal_uL15_N2490 → 2490.3 → 2490.3.1
100DQe1vy4DQ1DQ:1-141Ribosomal_L16325 → 325.1 → 325.1.5
101DRe1vy4DR1DR:1-118Ribosomal_L17218 → 218.3 → 218.3.1
102DSe1vy4DS1DS:3-112Ribosomal_L18p2484 → 2484.1 → 2484.1.1
103DTe1vy4DT1DT:1-131Ribosomal_L194 → 4.1 → 4.1.1
104DUe1vy4DU1DU:2-117Ribosomal_L20143 → 143.2 → 143.2.1
105DVe1vy4DV1DV:1-101Ribosomal_L21p4186 → 4186.1 → 4186.1.1
106DWe1vy4DW1DW:1-112Ribosomal_L22218 → 218.2 → 218.2.1
107DXe1vy4DX1DX:1-95Ribosomal_L23304 → 304.109 → 304.109.1
108DYe1vy4DY1DY:1-107KOW,ribosomal_L244 → 4.1 → 4.1.1
109DZe1vy4DZ1DZ:93-174Ribosomal_TL5_C240 → 240.1 → 240.1.1
110DZe1vy4DZ2DZ:1-92Ribosomal_L25p239 → 239.1 → 239.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors