ECODEvolutionary Classification of Protein Domains

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PDB 1YCP

X-RAY DIFFRACTION2.35 Å7 chains5 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain HALPHA THROMBINview chain

1 domain

e1ycpH1(H:1-259)

Chain J-K-Mview chain

1 domain

e1ycp.2(J:13-47,K:1-146,M:5-105)

Chain KEPSILON THROMBINview chain

1 domain

e1ycpK01(K:16-150)

Chain LEPSILON THROMBINview chain

1 domain

e1ycpL1(L:13-47)

Chain MEPSILON THROMBINview chain

1 domain

e1ycpM01(M:146-247)

All Domains (5)

#	Chain	Domain ID	Range	Family	Classification
1	H	e1ycpH1	H:1-259	Trypsin	1 → 1.1 → 1.1.17
2	J-K-M	e1ycp.2	J:13-47,K:1-146,M:5-105	Trypsin,Thrombin_light	1 → 1.1 → 1.1.5
3	K	e1ycpK01	K:16-150	Trypsin	1 → 1.1 → 1.1.17
4	L	e1ycpL1	L:13-47	Thrombin_light	1 → 1.1 → 1.1.5
5	M	e1ycpM01	M:146-247	Trypsin	1 → 1.1 → 1.1.17

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors