ECODEvolutionary Classification of Protein Domains

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PDB 1YMM

X-RAY DIFFRACTION3.10 Å5 chains7 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain AHLA class II histocompatibility antigen, DR alpha chainview chain

2 domains

e1ymmA1(A:83-179)e1ymmA2(A:13-81)

Chain BHLA class II histocompatibility antigen, DR beta chainview chain

2 domains

e1ymmB1(B:95-189)e1ymmB2(B:3-87)

Chain DT cell receptor alpha chainview chain

1 domain

e1ymmD1(D:9-104)

Chain ET-cell receptor beta chainview chain

2 domains

e1ymmE1(E:1-118)e1ymmE2(E:123-246)

All Domains (7)

#	Chain	Domain ID	Range	Family	Classification
1	A	e1ymmA1	A:83-179	C1-set	11 → 11.1 → 11.1.1
2	A	e1ymmA2	A:13-81	MHC_II_alpha	233 → 233.1 → 233.1.1
3	B	e1ymmB1	B:95-189	C1-set	11 → 11.1 → 11.1.1
4	B	e1ymmB2	B:3-87	MHC_II_beta	233 → 233.1 → 233.1.1
5	D	e1ymmD1	D:9-104	V-set	11 → 11.1 → 11.1.1
6	E	e1ymmE1	E:1-118	V-set	11 → 11.1 → 11.1.1
7	E	e1ymmE2	E:123-246	C1-set	11 → 11.1 → 11.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors