ECODEvolutionary Classification of Protein Domains

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PDB 2EFD

X-RAY DIFFRACTION3.00 Å4 chains6 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain ASimilarity to vacuolar protein sorting-associated protein VPS9view chain

2 domains

e2efdA1(A:95-262)e2efdA2(A:17-94)

Chain BSmall GTP-binding protein-likeview chain

1 domain

e2efdB1(B:8-172)

Chain CSimilarity to vacuolar protein sorting-associated protein VPS9view chain

2 domains

e2efdC1(C:95-262)e2efdC2(C:17-94)

Chain DSmall GTP-binding protein-likeview chain

1 domain

e2efdD1(D:8-172)

All Domains (6)

#	Chain	Domain ID	Range	Family	Classification
1	A	e2efdA1	A:95-262	VPS9	627 → 627.1 → 627.1.1
2	A	e2efdA2	A:17-94	DUF5601	633 → 633.24 → 633.24.1
3	B	e2efdB1	B:8-172	Ras	2004 → 2004.1 → 2004.1.1
4	C	e2efdC1	C:95-262	VPS9	627 → 627.1 → 627.1.1
5	C	e2efdC2	C:17-94	DUF5601	633 → 633.24 → 633.24.1
6	D	e2efdD1	D:8-172	Ras	2004 → 2004.1 → 2004.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors