ECODEvolutionary Classification of Protein Domains

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PDB 3ABM

X-RAY DIFFRACTION1.95 Å26 chains28 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain ACytochrome c oxidase subunit 1view chain

1 domain

e3abmA1(A:1-514)

Chain BCytochrome c oxidase subunit 2view chain

2 domains

e3abmB1(B:1-90)e3abmB2(B:91-227)

Chain CCytochrome c oxidase subunit 3view chain

1 domain

e3abmC1(C:3-261)

Chain DCytochrome c oxidase subunit 4 isoform 1view chain

1 domain

e3abmD1(D:4-147)

Chain ECytochrome c oxidase subunit 5Aview chain

1 domain

e3abmE1(E:6-109)

Chain FCytochrome c oxidase subunit 5Bview chain

1 domain

e3abmF1(F:4-96)

Chain GCytochrome c oxidase subunit 6A2view chain

1 domain

e3abmG1(G:1-84)

Chain HCytochrome c oxidase subunit 6B1view chain

1 domain

e3abmH1(H:11-85)

Chain ICytochrome c oxidase subunit 6Cview chain

1 domain

e3abmI1(I:3-73)

Chain JCytochrome c oxidase polypeptide 7A1view chain

1 domain

e3abmJ1(J:1-57)

Chain KCytochrome c oxidase subunit 7Bview chain

1 domain

e3abmK1(K:6-54)

Chain LCytochrome c oxidase subunit 7Cview chain

1 domain

e3abmL1(L:2-47)

Chain MCytochrome c oxidase subunit 8Bview chain

1 domain

e3abmM1(M:1-43)

Chain NCytochrome c oxidase subunit 1view chain

1 domain

e3abmN1(N:1-514)

Chain OCytochrome c oxidase subunit 2view chain

2 domains

e3abmO1(O:1-90)e3abmO2(O:91-227)

Chain PCytochrome c oxidase subunit 3view chain

1 domain

e3abmP1(P:3-261)

Chain QCytochrome c oxidase subunit 4 isoform 1view chain

1 domain

e3abmQ1(Q:4-147)

Chain RCytochrome c oxidase subunit 5Aview chain

1 domain

e3abmR1(R:6-109)

Chain SCytochrome c oxidase subunit 5Bview chain

1 domain

e3abmS1(S:4-96)

Chain TCytochrome c oxidase subunit 6A2view chain

1 domain

e3abmT1(T:1-84)

Chain UCytochrome c oxidase subunit 6B1view chain

1 domain

e3abmU1(U:11-85)

Chain VCytochrome c oxidase subunit 6Cview chain

1 domain

e3abmV1(V:3-73)

Chain WCytochrome c oxidase polypeptide 7A1view chain

1 domain

e3abmW1(W:1-57)

Chain XCytochrome c oxidase subunit 7Bview chain

1 domain

e3abmX1(X:6-54)

Chain YCytochrome c oxidase subunit 7Cview chain

1 domain

e3abmY1(Y:2-47)

Chain ZCytochrome c oxidase subunit 8Bview chain

1 domain

e3abmZ1(Z:1-43)

All Domains (28)

#	Chain	Domain ID	Range	Family	Classification
1	A	e3abmA1	A:1-514	COX1	5038 → 5038.1 → 5038.1.1
2	B	e3abmB1	B:1-90	COX2_TM	5040 → 5040.1 → 5040.1.1
3	B	e3abmB2	B:91-227	COX2	3156 → 3156.1 → 3156.1.1
4	C	e3abmC1	C:3-261	COX3	5039 → 5039.1 → 5039.1.1
5	D	e3abmD1	D:4-147	COX4	5003 → 5003.1 → 5003.1.1
6	E	e3abmE1	E:6-109	COX5A	109 → 109.7 → 109.7.1
7	F	e3abmF1	F:4-96	COX5B	375 → 375.1 → 375.1.8
8	G	e3abmG1	G:1-84	COX6A	5004 → 5004.1 → 5004.1.1
9	H	e3abmH1	H:11-85	COX6B	540 → 540.1 → 540.1.1
10	I	e3abmI1	I:3-73	COX6C	5005 → 5005.1 → 5005.1.1
11	J	e3abmJ1	J:1-57	COX7a	5006 → 5006.1 → 5006.1.1
12	K	e3abmK1	K:6-54	COX7B	5007 → 5007.1 → 5007.1.1
13	L	e3abmL1	L:2-47	COX7C	5008 → 5008.1 → 5008.1.1
14	M	e3abmM1	M:1-43	COX8	5009 → 5009.1 → 5009.1.1
15	N	e3abmN1	N:1-514	COX1	5038 → 5038.1 → 5038.1.1
16	O	e3abmO1	O:1-90	COX2_TM	5040 → 5040.1 → 5040.1.1
17	O	e3abmO2	O:91-227	COX2	3156 → 3156.1 → 3156.1.1
18	P	e3abmP1	P:3-261	COX3	5039 → 5039.1 → 5039.1.1
19	Q	e3abmQ1	Q:4-147	COX4	5003 → 5003.1 → 5003.1.1
20	R	e3abmR1	R:6-109	COX5A	109 → 109.7 → 109.7.1
21	S	e3abmS1	S:4-96	COX5B	375 → 375.1 → 375.1.8
22	T	e3abmT1	T:1-84	COX6A	5004 → 5004.1 → 5004.1.1
23	U	e3abmU1	U:11-85	COX6B	540 → 540.1 → 540.1.1
24	V	e3abmV1	V:3-73	COX6C	5005 → 5005.1 → 5005.1.1
25	W	e3abmW1	W:1-57	COX7a	5006 → 5006.1 → 5006.1.1
26	X	e3abmX1	X:6-54	COX7B	5007 → 5007.1 → 5007.1.1
27	Y	e3abmY1	Y:2-47	COX7C	5008 → 5008.1 → 5008.1.1
28	Z	e3abmZ1	Z:1-43	COX8	5009 → 5009.1 → 5009.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors