ECODEvolutionary Classification of Protein Domains

Home/PDB

PDB 3C5Z

X-RAY DIFFRACTION2.55 Å8 chains16 ECOD domains

View in RCSB PDB

3D Structure(domains colored, ligands/nucleic acids shown)

Loading viewer...

Domains by Chain

Chain ATCR B3K506 Alpha Chainview chain

2 domains

e3c5zA1(A:1-111)e3c5zA2(A:112-202)

Chain BTCR B3K506 Beta Chainview chain

2 domains

e3c5zB3(B:115-240)e3c5zB4(B:1-114)

Chain CH-2 class II histocompatibility antigen, A-B alpha chainview chain

2 domains

e3c5zC1(C:83-181)e3c5zC2(C:1-82)

Chain D3K peptide, Linker, and H-2 class II histocompatibility antigen (A beta chain)view chain

2 domains

e3c5zD1(D:122-217)e3c5zD2(D:1-121)

Chain ETCR B3K506 Alpha Chainview chain

2 domains

e3c5zE1(E:1-111)e3c5zE2(E:112-201)

Chain FTCR B3K506 Beta Chainview chain

2 domains

e3c5zF3(F:115-240)e3c5zF4(F:1-114)

Chain GH-2 class II histocompatibility antigen, A-B alpha chainview chain

2 domains

e3c5zG1(G:83-181)e3c5zG2(G:1-82)

Chain H3K peptide, Linker, and H-2 class II histocompatibility antigen (A beta chain)view chain

2 domains

e3c5zH1(H:122-217)e3c5zH2(H:1-121)

All Domains (16)

#	Chain	Domain ID	Range	Family	Classification
1	A	e3c5zA1	A:1-111	V-set	11 → 11.1 → 11.1.1
2	A	e3c5zA2	A:112-202	DUF1968	11 → 11.1 → 11.1.1
3	B	e3c5zB3	B:115-240	C1-set	11 → 11.1 → 11.1.1
4	B	e3c5zB4	B:1-114	V-set	11 → 11.1 → 11.1.1
5	C	e3c5zC1	C:83-181	C1-set	11 → 11.1 → 11.1.1
6	C	e3c5zC2	C:1-82	MHC_II_alpha	233 → 233.1 → 233.1.1
7	D	e3c5zD1	D:122-217	C1-set	11 → 11.1 → 11.1.1
8	D	e3c5zD2	D:1-121	MHC_II_beta	233 → 233.1 → 233.1.1
9	E	e3c5zE1	E:1-111	V-set	11 → 11.1 → 11.1.1
10	E	e3c5zE2	E:112-201	DUF1968	11 → 11.1 → 11.1.1
11	F	e3c5zF3	F:115-240	C1-set	11 → 11.1 → 11.1.1
12	F	e3c5zF4	F:1-114	V-set	11 → 11.1 → 11.1.1
13	G	e3c5zG1	G:83-181	C1-set	11 → 11.1 → 11.1.1
14	G	e3c5zG2	G:1-82	MHC_II_alpha	233 → 233.1 → 233.1.1
15	H	e3c5zH1	H:122-217	C1-set	11 → 11.1 → 11.1.1
16	H	e3c5zH2	H:1-121	MHC_II_beta	233 → 233.1 → 233.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors