ECODEvolutionary Classification of Protein Domains

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PDB 3RKD

X-RAY DIFFRACTION1.90 Å6 chains10 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain ACapsid proteinview chain

1 domain

e3rkdA1(A:459-604)

Chain BCapsid proteinview chain

1 domain

e3rkdB1(B:460-604)

Chain CMonoclonal Antibody, Light Chainview chain

2 domains

e3rkdC1(C:1-107)e3rkdC2(C:108-213)

Chain DMonoclonal Antibody, Heavy Chainview chain

2 domains

e3rkdD1(D:1-124)e3rkdD2(D:125-224)

Chain HMonoclonal Antibody, Heavy Chainview chain

2 domains

e3rkdH1(H:125-224)e3rkdH2(H:1-124)

Chain LMonoclonal Antibody, Light Chainview chain

2 domains

e3rkdL1(L:1-107)e3rkdL2(L:108-213)

All Domains (10)

#	Chain	Domain ID	Range	Family	Classification
1	A	e3rkdA1	A:459-604	SP2_C	1 → 1.1 → 1.1.13
2	B	e3rkdB1	B:460-604	SP2_C	1 → 1.1 → 1.1.13
3	C	e3rkdC1	C:1-107	V-set	11 → 11.1 → 11.1.1
4	C	e3rkdC2	C:108-213	C1-set	11 → 11.1 → 11.1.1
5	D	e3rkdD1	D:1-124	V-set	11 → 11.1 → 11.1.1
6	D	e3rkdD2	D:125-224	C1-set	11 → 11.1 → 11.1.1
7	H	e3rkdH1	H:125-224	C1-set	11 → 11.1 → 11.1.1
8	H	e3rkdH2	H:1-124	V-set	11 → 11.1 → 11.1.1
9	L	e3rkdL1	L:1-107	V-set	11 → 11.1 → 11.1.1
10	L	e3rkdL2	L:108-213	C1-set	11 → 11.1 → 11.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors