ECODEvolutionary Classification of Protein Domains

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PDB 4H8W

X-RAY DIFFRACTION1.85 Å4 chains8 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain CT-cell surface glycoprotein CD4view chain

2 domains

e4h8wC1(C:1-97)e4h8wC2(C:98-176)

Chain GHIV-1 CLADE A/E 93TH057 (H375S) GP120view chain

2 domains

e4h8wG1(G:44-255,G:474-492)e4h8wG2(G:256-473)

Chain HFAB HEAVY CHAIN OF ADCC AND NON-NEUTRALIZING ANTI-HIV-1 ANTIBODY N5-I5view chain

2 domains

e4h8wH1(H:114-213)e4h8wH2(H:1-113)

Chain LFAB LIGHT CHAIN OF ADCC AND NON-NEUTRALIZING ANTI-HIV-1 ANTIBODY N5-I5view chain

2 domains

e4h8wL1(L:109-209)e4h8wL2(L:3-108)

All Domains (8)

#	Chain	Domain ID	Range	Family	Classification
1	C	e4h8wC1	C:1-97	ig	11 → 11.1 → 11.1.1
2	C	e4h8wC2	C:98-176	C2-set	11 → 11.1 → 11.1.1
3	G	e4h8wG1	G:44-255,G:474-492	GP120	1061 → 1061.1 → 1061.1.1
4	G	e4h8wG2	G:256-473	GP120	259 → 259.1 → 259.1.1
5	H	e4h8wH1	H:114-213	C1-set	11 → 11.1 → 11.1.1
6	H	e4h8wH2	H:1-113	V-set	11 → 11.1 → 11.1.1
7	L	e4h8wL1	L:109-209	C1-set	11 → 11.1 → 11.1.1
8	L	e4h8wL2	L:3-108	V-set	11 → 11.1 → 11.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors