ECODEvolutionary Classification of Protein Domains

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PDB 4WHV

X-RAY DIFFRACTION8.30 Å12 chains12 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain APolyubiquitin-Bview chain

1 domain

e4whvA1(A:1-71)

Chain BUbiquitin-conjugating enzyme E2 Nview chain

1 domain

e4whvB1(B:4-150)

Chain CE3 ubiquitin-protein ligase RNF8view chain

1 domain

e4whvC1(C:345-480)

Chain DE3 ubiquitin-protein ligase RNF8view chain

1 domain

e4whvD1(D:345-480)

Chain EUbiquitin-conjugating enzyme E2 Nview chain

1 domain

e4whvE1(E:4-150)

Chain FPolyubiquitin-Bview chain

1 domain

e4whvF1(F:1-71)

Chain GPolyubiquitin-Bview chain

1 domain

e4whvG1(G:1-71)

Chain HUbiquitin-conjugating enzyme E2 Nview chain

1 domain

e4whvH1(H:4-150)

Chain IE3 ubiquitin-protein ligase RNF8view chain

1 domain

e4whvI1(I:380-480)

Chain JE3 ubiquitin-protein ligase RNF8view chain

1 domain

e4whvJ1(J:380-480)

Chain KUbiquitin-conjugating enzyme E2 Nview chain

1 domain

e4whvK1(K:4-150)

Chain LPolyubiquitin-Bview chain

1 domain

e4whvL1(L:1-71)

All Domains (12)

#	Chain	Domain ID	Range	Family	Classification
1	A	e4whvA1	A:1-71	ubiquitin	221 → 221.1 → 221.1.1
2	B	e4whvB1	B:4-150	UQ_con	216 → 216.1 → 216.1.1
3	C	e4whvC1	C:345-480	zf-C3HC4_3	376 → 376.1 → 376.1.1
4	D	e4whvD1	D:345-480	zf-C3HC4_3	376 → 376.1 → 376.1.1
5	E	e4whvE1	E:4-150	UQ_con	216 → 216.1 → 216.1.1
6	F	e4whvF1	F:1-71	ubiquitin	221 → 221.1 → 221.1.1
7	G	e4whvG1	G:1-71	ubiquitin	221 → 221.1 → 221.1.1
8	H	e4whvH1	H:4-150	UQ_con	216 → 216.1 → 216.1.1
9	I	e4whvI1	I:380-480	zf-C3HC4_3	376 → 376.1 → 376.1.1
10	J	e4whvJ1	J:380-480	zf-C3HC4_3	376 → 376.1 → 376.1.1
11	K	e4whvK1	K:4-150	UQ_con	216 → 216.1 → 216.1.1
12	L	e4whvL1	L:1-71	ubiquitin	221 → 221.1 → 221.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors