ECODEvolutionary Classification of Protein Domains

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PDB 4Y16

X-RAY DIFFRACTION2.60 Å4 chains7 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain AAntigen-presenting glycoprotein CD1d1view chain

2 domains

e4y16A1(A:174-279)e4y16A2(A:6-173)

Chain BBeta-2-microglobulinview chain

1 domain

e4y16B1(B:2-99)

Chain CChimeric TCR Valpha14/Jalpha18 chain (mouse variable domain, human constant domain)view chain

2 domains

e4y16C1(C:115-203)e4y16C2(C:1-114)

Chain DChimeric TCR Vbeta8.2 chain (mouse variable domain, human constant domain)view chain

2 domains

e4y16D1(D:116-240)e4y16D2(D:2-115)

All Domains (7)

#	Chain	Domain ID	Range	Family	Classification
1	A	e4y16A1	A:174-279	C1-set	11 → 11.1 → 11.1.1
2	A	e4y16A2	A:6-173	MHC_I_3	233 → 233.1 → 233.1.1
3	B	e4y16B1	B:2-99	C1-set	11 → 11.1 → 11.1.1
4	C	e4y16C1	C:115-203	DUF1968	11 → 11.1 → 11.1.1
5	C	e4y16C2	C:1-114	V-set	11 → 11.1 → 11.1.1
6	D	e4y16D1	D:116-240	C1-set	11 → 11.1 → 11.1.1
7	D	e4y16D2	D:2-115	V-set	11 → 11.1 → 11.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors