ECODEvolutionary Classification of Protein Domains

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PDB 4YC2

X-RAY DIFFRACTION3.00 Å6 chains10 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain AThe stabilized inner domain of clade A/E HIV-1 gp120 from E. coliview chain

1 domain

e4yc2A1(A:45-491)

Chain BThe antibody A32 Fab heavy chain.view chain

2 domains

e4yc2B1(B:114-214)e4yc2B2(B:1-113)

Chain CThe antibody A32 Fab light chain.view chain

2 domains

e4yc2C1(C:108-208)e4yc2C2(C:4-107)

Chain GThe stabilized inner domain of clade A/E HIV-1 gp120 from E. coliview chain

1 domain

e4yc2G1(G:45-491)

Chain HThe antibody A32 Fab heavy chain.view chain

2 domains

e4yc2H1(H:1-113)e4yc2H2(H:114-214)

Chain LThe antibody A32 Fab light chain.view chain

2 domains

e4yc2L1(L:108-208)e4yc2L2(L:4-107)

All Domains (10)

#	Chain	Domain ID	Range	Family	Classification
1	A	e4yc2A1	A:45-491	GP120	1061 → 1061.1 → 1061.1.1
2	B	e4yc2B1	B:114-214	C1-set	11 → 11.1 → 11.1.1
3	B	e4yc2B2	B:1-113	V-set	11 → 11.1 → 11.1.1
4	C	e4yc2C1	C:108-208	C1-set	11 → 11.1 → 11.1.1
5	C	e4yc2C2	C:4-107	V-set	11 → 11.1 → 11.1.1
6	G	e4yc2G1	G:45-491	GP120	1061 → 1061.1 → 1061.1.1
7	H	e4yc2H1	H:1-113	V-set	11 → 11.1 → 11.1.1
8	H	e4yc2H2	H:114-214	C1-set	11 → 11.1 → 11.1.1
9	L	e4yc2L1	L:108-208	C1-set	11 → 11.1 → 11.1.1
10	L	e4yc2L2	L:4-107	V-set	11 → 11.1 → 11.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors