ECODEvolutionary Classification of Protein Domains

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PDB 4YFL

X-RAY DIFFRACTION3.39 Å6 chains12 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain EEnvelope glycoprotein gp160,Envelope glycoprotein gp160,Envelope glycoprotein gp160view chain

2 domains

e4yflE1(E:44-123,E:199-255,E:474-492)e4yflE2(E:256-301,E:324-473)

Chain F1B2530 heavy chainview chain

2 domains

e4yflF2(F:3-113)e4yflF1(F:114-214)

Chain GEnvelope glycoprotein gp160,Envelope glycoprotein gp160,Envelope glycoprotein gp160view chain

2 domains

e4yflG1(G:44-123,G:199-255,G:474-492)e4yflG2(G:256-301,G:324-473)

Chain H1B2530 heavy chainview chain

2 domains

e4yflH1(H:3-125)e4yflH2(H:126-227)

Chain I1B2530 Light chainview chain

2 domains

e4yflI1(I:105D-208)e4yflI2(I:5-105C)

Chain L1B2530 Light chainview chain

2 domains

e4yflL1(L:106C-208)e4yflL2(L:1-106B)

All Domains (12)

#	Chain	Domain ID	Range	Family	Classification
1	E	e4yflE1	E:44-123,E:199-255,E:474-492	GP120	1061 → 1061.1 → 1061.1.1
2	E	e4yflE2	E:256-301,E:324-473	GP120	259 → 259.1 → 259.1.1
3	F	e4yflF2	F:3-113	V-set	11 → 11.1 → 11.1.1
4	F	e4yflF1	F:114-214	C1-set	11 → 11.1 → 11.1.1
5	G	e4yflG1	G:44-123,G:199-255,G:474-492	GP120	1061 → 1061.1 → 1061.1.1
6	G	e4yflG2	G:256-301,G:324-473	GP120	259 → 259.1 → 259.1.1
7	H	e4yflH1	H:3-125	V-set	11 → 11.1 → 11.1.1
8	H	e4yflH2	H:126-227	C1-set	11 → 11.1 → 11.1.1
9	I	e4yflI1	I:105D-208	C1-set	11 → 11.1 → 11.1.1
10	I	e4yflI2	I:5-105C	V-set	11 → 11.1 → 11.1.1
11	L	e4yflL1	L:106C-208	C1-set	11 → 11.1 → 11.1.1
12	L	e4yflL2	L:1-106B	V-set	11 → 11.1 → 11.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors