ECODEvolutionary Classification of Protein Domains

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PDB 4ZFF

X-RAY DIFFRACTION2.75 Å6 chains10 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain AFragment antigen binding (Fab) 5A12 Heavy chainview chain

2 domains

e4zffA2(A:1-113)e4zffA1(A:114-209)

Chain BFragment antigen binding (Fab) 5A12 Light chainview chain

2 domains

e4zffB1(B:1-107)e4zffB2(B:108-212)

Chain CVascular endothelial growth factor Aview chain

1 domain

e4zffC1(C:13-108)

Chain DVascular endothelial growth factor Aview chain

1 domain

e4zffD1(D:11-109)

Chain HFragment antigen binding (Fab) 5A12 Heavy chainview chain

2 domains

e4zffH2(H:1-113)e4zffH3(H:114-212)

Chain LFragment antigen binding (Fab) 5A12 Light chainview chain

2 domains

e4zffL1(L:1-107)e4zffL2(L:108-212)

All Domains (10)

#	Chain	Domain ID	Range	Family	Classification
1	A	e4zffA2	A:1-113	V-set	11 → 11.1 → 11.1.1
2	A	e4zffA1	A:114-209	C1-set	11 → 11.1 → 11.1.1
3	B	e4zffB1	B:1-107	V-set	11 → 11.1 → 11.1.1
4	B	e4zffB2	B:108-212	C1-set	11 → 11.1 → 11.1.1
5	C	e4zffC1	C:13-108	PDGF	385 → 385.1 → 385.1.1
6	D	e4zffD1	D:11-109	PDGF	385 → 385.1 → 385.1.1
7	H	e4zffH2	H:1-113	V-set	11 → 11.1 → 11.1.1
8	H	e4zffH3	H:114-212	C1-set	11 → 11.1 → 11.1.1
9	L	e4zffL1	L:1-107	V-set	11 → 11.1 → 11.1.1
10	L	e4zffL2	L:108-212	C1-set	11 → 11.1 → 11.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors