ECODEvolutionary Classification of Protein Domains

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PDB 5B1B

X-RAY DIFFRACTION1.60 Å26 chains28 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain ACytochrome c oxidase subunit 1view chain

1 domain

e5b1bA1(A:1-514)

Chain BCytochrome c oxidase subunit 2view chain

2 domains

e5b1bB1(B:1-90)e5b1bB2(B:91-227)

Chain CCytochrome c oxidase subunit 3view chain

1 domain

e5b1bC1(C:5-261)

Chain DCytochrome c oxidase subunit 4 isoform 1, mitochondrialview chain

1 domain

e5b1bD1(D:7-147)

Chain ECytochrome c oxidase subunit 5A, mitochondrialview chain

1 domain

e5b1bE1(E:9-109)

Chain FCytochrome c oxidase subunit 5B, mitochondrialview chain

1 domain

e5b1bF1(F:1-98)

Chain GCytochrome c oxidase subunit 6A2, mitochondrialview chain

1 domain

e5b1bG1(G:1-84)

Chain HCytochrome c oxidase subunit 6B1view chain

1 domain

e5b1bH1(H:7-85)

Chain ICytochrome c oxidase subunit 6Cview chain

1 domain

e5b1bI1(I:1-73)

Chain JCytochrome c oxidase subunit 7A1, mitochondrialview chain

1 domain

e5b1bJ1(J:1-58)

Chain KCytochrome c oxidase subunit 7B, mitochondrialview chain

1 domain

e5b1bK1(K:11-54)

Chain LCytochrome c oxidase subunit 7C, mitochondrialview chain

1 domain

e5b1bL1(L:3-47)

Chain MCytochrome c oxidase subunit 8B, mitochondrialview chain

1 domain

e5b1bM1(M:1-43)

Chain NCytochrome c oxidase subunit 1view chain

1 domain

e5b1bN1(N:1-514)

Chain OCytochrome c oxidase subunit 2view chain

2 domains

e5b1bO1(O:91-227)e5b1bO2(O:1-90)

Chain PCytochrome c oxidase subunit 3view chain

1 domain

e5b1bP1(P:5-261)

Chain QCytochrome c oxidase subunit 4 isoform 1, mitochondrialview chain

1 domain

e5b1bQ1(Q:7-147)

Chain RCytochrome c oxidase subunit 5A, mitochondrialview chain

1 domain

e5b1bR1(R:9-109)

Chain SCytochrome c oxidase subunit 5B, mitochondrialview chain

1 domain

e5b1bS1(S:1-98)

Chain TCytochrome c oxidase subunit 6A2, mitochondrialview chain

1 domain

e5b1bT1(T:1-84)

Chain UCytochrome c oxidase subunit 6B1view chain

1 domain

e5b1bU1(U:7-85)

Chain VCytochrome c oxidase subunit 6Cview chain

1 domain

e5b1bV1(V:1-73)

Chain WCytochrome c oxidase subunit 7A1, mitochondrialview chain

1 domain

e5b1bW1(W:1-58)

Chain XCytochrome c oxidase subunit 7B, mitochondrialview chain

1 domain

e5b1bX1(X:11-54)

Chain YCytochrome c oxidase subunit 7C, mitochondrialview chain

1 domain

e5b1bY1(Y:3-47)

Chain ZCytochrome c oxidase subunit 8B, mitochondrialview chain

1 domain

e5b1bZ1(Z:1-43)

All Domains (28)

#	Chain	Domain ID	Range	Family	Classification
1	A	e5b1bA1	A:1-514	COX1	5038 → 5038.1 → 5038.1.1
2	B	e5b1bB1	B:1-90	COX2_TM	5040 → 5040.1 → 5040.1.1
3	B	e5b1bB2	B:91-227	COX2	3156 → 3156.1 → 3156.1.1
4	C	e5b1bC1	C:5-261	COX3	5039 → 5039.1 → 5039.1.1
5	D	e5b1bD1	D:7-147	COX4	5003 → 5003.1 → 5003.1.1
6	E	e5b1bE1	E:9-109	COX5A	109 → 109.7 → 109.7.1
7	F	e5b1bF1	F:1-98	COX5B	375 → 375.1 → 375.1.8
8	G	e5b1bG1	G:1-84	COX6A	5004 → 5004.1 → 5004.1.1
9	H	e5b1bH1	H:7-85	COX6B	540 → 540.1 → 540.1.1
10	I	e5b1bI1	I:1-73	COX6C	5005 → 5005.1 → 5005.1.1
11	J	e5b1bJ1	J:1-58	COX7a	5006 → 5006.1 → 5006.1.1
12	K	e5b1bK1	K:11-54	COX7B	5007 → 5007.1 → 5007.1.1
13	L	e5b1bL1	L:3-47	COX7C	5008 → 5008.1 → 5008.1.1
14	M	e5b1bM1	M:1-43	COX8	5009 → 5009.1 → 5009.1.1
15	N	e5b1bN1	N:1-514	COX1	5038 → 5038.1 → 5038.1.1
16	O	e5b1bO1	O:91-227	COX2	3156 → 3156.1 → 3156.1.1
17	O	e5b1bO2	O:1-90	COX2_TM	5040 → 5040.1 → 5040.1.1
18	P	e5b1bP1	P:5-261	COX3	5039 → 5039.1 → 5039.1.1
19	Q	e5b1bQ1	Q:7-147	COX4	5003 → 5003.1 → 5003.1.1
20	R	e5b1bR1	R:9-109	COX5A	109 → 109.7 → 109.7.1
21	S	e5b1bS1	S:1-98	COX5B	375 → 375.1 → 375.1.8
22	T	e5b1bT1	T:1-84	COX6A	5004 → 5004.1 → 5004.1.1
23	U	e5b1bU1	U:7-85	COX6B	540 → 540.1 → 540.1.1
24	V	e5b1bV1	V:1-73	COX6C	5005 → 5005.1 → 5005.1.1
25	W	e5b1bW1	W:1-58	COX7a	5006 → 5006.1 → 5006.1.1
26	X	e5b1bX1	X:11-54	COX7B	5007 → 5007.1 → 5007.1.1
27	Y	e5b1bY1	Y:3-47	COX7C	5008 → 5008.1 → 5008.1.1
28	Z	e5b1bZ1	Z:1-43	COX8	5009 → 5009.1 → 5009.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors