ECODEvolutionary Classification of Protein Domains

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PDB 5BNB

X-RAY DIFFRACTION2.49 Å8 chains8 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain AUbiquitin-conjugating enzyme E2 Sview chain

1 domain

e5bnbA1(A:7-156)

Chain BUbiquitin-conjugating enzyme E2 Sview chain

1 domain

e5bnbB1(B:7-156)

Chain CUbiquitin-conjugating enzyme E2 Sview chain

1 domain

e5bnbC1(C:9-156)

Chain DUbiquitin-conjugating enzyme E2 Sview chain

1 domain

e5bnbD1(D:7-79,D:109-155)

Chain EPolyubiquitin-Bview chain

1 domain

e5bnbE1(E:1-76)

Chain FPolyubiquitin-Bview chain

1 domain

e5bnbF1(F:1-72)

Chain GPolyubiquitin-Bview chain

1 domain

e5bnbG1(G:1-72)

Chain IPolyubiquitin-Bview chain

1 domain

e5bnbI1(I:3-76)

All Domains (8)

#	Chain	Domain ID	Range	Family	Classification
1	A	e5bnbA1	A:7-156	UQ_con	216 → 216.1 → 216.1.1
2	B	e5bnbB1	B:7-156	UQ_con	216 → 216.1 → 216.1.1
3	C	e5bnbC1	C:9-156	UQ_con	216 → 216.1 → 216.1.1
4	D	e5bnbD1	D:7-79,D:109-155	UQ_con	216 → 216.1 → 216.1.1
5	E	e5bnbE1	E:1-76	ubiquitin	221 → 221.1 → 221.1.1
6	F	e5bnbF1	F:1-72	ubiquitin	221 → 221.1 → 221.1.1
7	G	e5bnbG1	G:1-72	ubiquitin	221 → 221.1 → 221.1.1
8	I	e5bnbI1	I:3-76	ubiquitin	221 → 221.1 → 221.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors