ECODEvolutionary Classification of Protein Domains

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PDB 5D0K

X-RAY DIFFRACTION2.65 Å12 chains12 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain AUbiquitin-conjugating enzyme E2 D2view chain

1 domain

e5d0kA1(A:1-147)

Chain BPolyubiquitin-Bview chain

1 domain

e5d0kB1(B:1-76)

Chain CRING finger protein 165view chain

1 domain

e5d0kC1(C:257-272,C:289-342)

Chain DUbiquitin-conjugating enzyme E2 D2view chain

1 domain

e5d0kD1(D:1-147)

Chain EPolyubiquitin-Bview chain

1 domain

e5d0kE1(E:1-76)

Chain FRING finger protein 165view chain

1 domain

e5d0kF1(F:258-272,F:289-342)

Chain GUbiquitin-conjugating enzyme E2 D2view chain

1 domain

e5d0kG1(G:1-147)

Chain HPolyubiquitin-Bview chain

1 domain

e5d0kH1(H:1-76)

Chain IRING finger protein 165view chain

1 domain

e5d0kI1(I:258-272,I:289-342)

Chain JUbiquitin-conjugating enzyme E2 D2view chain

1 domain

e5d0kJ1(J:1-147)

Chain KPolyubiquitin-Bview chain

1 domain

e5d0kK1(K:1-76)

Chain LRING finger protein 165view chain

1 domain

e5d0kL1(L:258-272,L:289-342)

All Domains (12)

#	Chain	Domain ID	Range	Family	Classification
1	A	e5d0kA1	A:1-147	UQ_con	216 → 216.1 → 216.1.1
2	B	e5d0kB1	B:1-76	ubiquitin	221 → 221.1 → 221.1.1
3	C	e5d0kC1	C:257-272,C:289-342	zf-RING_2	376 → 376.1 → 376.1.1
4	D	e5d0kD1	D:1-147	UQ_con	216 → 216.1 → 216.1.1
5	E	e5d0kE1	E:1-76	ubiquitin	221 → 221.1 → 221.1.1
6	F	e5d0kF1	F:258-272,F:289-342	zf-RING_2	376 → 376.1 → 376.1.1
7	G	e5d0kG1	G:1-147	UQ_con	216 → 216.1 → 216.1.1
8	H	e5d0kH1	H:1-76	ubiquitin	221 → 221.1 → 221.1.1
9	I	e5d0kI1	I:258-272,I:289-342	zf-RING_2	376 → 376.1 → 376.1.1
10	J	e5d0kJ1	J:1-147	UQ_con	216 → 216.1 → 216.1.1
11	K	e5d0kK1	K:1-76	ubiquitin	221 → 221.1 → 221.1.1
12	L	e5d0kL1	L:258-272,L:289-342	zf-RING_2	376 → 376.1 → 376.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors