ECODEvolutionary Classification of Protein Domains

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PDB 5EM2

X-RAY DIFFRACTION2.67 Å4 chains6 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain ARibosome biogenesis protein ERB1view chain

1 domain

e5em2A1(A:432-801)

Chain BRibosome biogenesis protein YTM1view chain

2 domains

e5em2B1(B:101-487)e5em2B2(B:10-100)

Chain CRibosome biogenesis protein ERB1view chain

1 domain

e5em2C1(C:432-801)

Chain DRibosome biogenesis protein YTM1view chain

2 domains

e5em2D1(D:101-487)e5em2D2(D:10-100)

All Domains (6)

#	Chain	Domain ID	Range	Family	Classification
1	A	e5em2A1	A:432-801	WD40	5 → 5.1 → 5.1.4
2	B	e5em2B1	B:101-487	WD40, Beta-prop_NOL10_N	5 → 5.1 → 5.1.4
3	B	e5em2B2	B:10-100	NLE	221 → 221.1 → 221.1.1
4	C	e5em2C1	C:432-801	WD40	5 → 5.1 → 5.1.4
5	D	e5em2D1	D:101-487	WD40, Beta-prop_NOL10_N	5 → 5.1 → 5.1.4
6	D	e5em2D2	D:10-100	NLE	221 → 221.1 → 221.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors