ECODEvolutionary Classification of Protein Domains

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PDB 5FER

X-RAY DIFFRACTION2.34 Å6 chains6 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain AE3 ubiquitin/ISG15 ligase TRIM25view chain

1 domain

e5ferA1(A:1-79)

Chain BUbiquitin-conjugating enzyme E2 D1view chain

1 domain

e5ferB1(B:1-145)

Chain CUbiquitin-40S ribosomal protein S27aview chain

1 domain

e5ferC1(C:1-76)

Chain DE3 ubiquitin/ISG15 ligase TRIM25view chain

1 domain

e5ferD1(D:3-82)

Chain EUbiquitin-conjugating enzyme E2 D1view chain

1 domain

e5ferE1(E:1-146)

Chain FUbiquitin-40S ribosomal protein S27aview chain

1 domain

e5ferF1(F:1-76)

All Domains (6)

#	Chain	Domain ID	Range	Family	Classification
1	A	e5ferA1	A:1-79	zf-RING_UBOX	376 → 376.1 → 376.1.1
2	B	e5ferB1	B:1-145	UQ_con	216 → 216.1 → 216.1.1
3	C	e5ferC1	C:1-76	ubiquitin	221 → 221.1 → 221.1.1
4	D	e5ferD1	D:3-82	zf-RING_UBOX	376 → 376.1 → 376.1.1
5	E	e5ferE1	E:1-146	UQ_con	216 → 216.1 → 216.1.1
6	F	e5ferF1	F:1-76	ubiquitin	221 → 221.1 → 221.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors