ECODEvolutionary Classification of Protein Domains

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PDB 5GMK

ELECTRON MICROSCOPY45 chains46 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain aU2 small nuclear ribonucleoprotein B''view chain

1 domain

e5gmka1(a:29-111)

Chain APre-mRNA-splicing factor 8view chain

5 domains

e5gmkA1(A:127-884)e5gmkA2(A:885-1255)e5gmkA3(A:1829-2085)e5gmkA4(A:1575-1577,A:1599-1828)e5gmkA5(A:1256-1574)

Chain bU2 small nuclear ribonucleoprotein A'view chain

1 domain

e5gmkb1(b:1-162)

Chain cPre-mRNA-splicing factor CEF1view chain

2 domains

e5gmkc1(c:60-111)e5gmkc2(c:9-59)

Chain CPre-mRNA-splicing factor SNU114view chain

5 domains

e5gmkC1(C:102-439)e5gmkC2(C:440-510,C:530-589)e5gmkC3(C:859-975)e5gmkC4(C:590-674)e5gmkC5(C:675-858)

Chain dPre-mRNA-splicing factor CLF1view chain

1 domain

e5gmkd1(d:36-275)

Chain eSmall nuclear ribonucleoprotein Sm D2view chain

1 domain

e5gmke1(e:44-108)

Chain gSmall nuclear ribonucleoprotein Sm D2view chain

1 domain

e5gmkg1(g:15-108)

Chain hSmall nuclear ribonucleoprotein Fview chain

1 domain

e5gmkh1(h:12-83)

Chain HPre-mRNA-splicing factor ISY1view chain

1 domain

e5gmkH1(H:30-96)

Chain iSmall nuclear ribonucleoprotein Eview chain

1 domain

e5gmki1(i:10-92)

Chain jSmall nuclear ribonucleoprotein Gview chain

1 domain

e5gmkj1(j:2-76)

Chain JPre-mRNA-splicing factor CWC21view chain

1 domain

e5gmkJ1(J:60-111)

Chain kSmall nuclear ribonucleoprotein-associated protein Bview chain

1 domain

e5gmkk1(k:4-55,k:75-102)

Chain lSmall nuclear ribonucleoprotein Sm D3view chain

1 domain

e5gmkl1(l:4-85)

Chain mSmall nuclear ribonucleoprotein Sm D1view chain

1 domain

e5gmkm1(m:1-48,m:76-109)

Chain nPre-mRNA-processing factor 17view chain

1 domain

e5gmkn1(n:151-455)

Chain oPre-mRNA-processing factor 19view chain

1 domain

e5gmko1(o:1-52)

Chain OPre-mRNA-splicing factor PRP46view chain

1 domain

e5gmkO1(O:111-447)

Chain pPre-mRNA-processing factor 19view chain

1 domain

e5gmkp1(p:1-52)

Chain qPre-mRNA-processing factor 19view chain

2 domains

e5gmkq1(q:144-493)e5gmkq2(q:1-61)

Chain QPre-mRNA-splicing factor SLT11view chain

2 domains

e5gmkQ1(Q:3-126)e5gmkQ2(Q:202-264,Q:288-296)

Chain rPre-mRNA-processing factor 19view chain

1 domain

e5gmkr1(r:1-51)

Chain RPre-mRNA-splicing factor CWC2view chain

2 domains

e5gmkR1(R:130-227)e5gmkR2(R:1-129)

Chain sSmall nuclear ribonucleoprotein-associated protein Bview chain

1 domain

e5gmks1(s:6-55,s:75-102)

Chain TPre-mRNA-splicing factor BUD31view chain

1 domain

e5gmkT1(T:1-157)

Chain uSmall nuclear ribonucleoprotein Eview chain

1 domain

e5gmku1(u:10-92)

Chain vPre-mRNA-splicing factor SYF1view chain

1 domain

e5gmkv1(v:569-734)

Chain wSmall nuclear ribonucleoprotein Fview chain

1 domain

e5gmkw1(w:12-83)

Chain xSmall nuclear ribonucleoprotein Gview chain

1 domain

e5gmkx1(x:2-76)

Chain ySmall nuclear ribonucleoprotein Sm D3view chain

1 domain

e5gmky1(y:4-85)

Chain zSmall nuclear ribonucleoprotein Sm D1view chain

1 domain

e5gmkz1(z:1-48,z:76-109)

Chain ZPre-mRNA-splicing factor CWC22view chain

2 domains

e5gmkZ1(Z:8-247)e5gmkZ2(Z:279-485)

All Domains (46)

#	Chain	Domain ID	Range	Family	Classification
1	a	e5gmka1	a:29-111	RRM_5	304 → 304.9 → 304.9.1
2	A	e5gmkA1	A:127-884	PRO8NT,PROCN	1038 → 1038.1 → 1038.1.1
3	A	e5gmkA2	A:885-1255	RRM_4	304 → 304.48 → 304.48.1
4	A	e5gmkA3	A:1829-2085	PRP8_domainIV	2484 → 2484.1 → 2484.1.1
5	A	e5gmkA4	A:1575-1577,A:1599-1828	U6-snRNA_bdg	2008 → 2008.1 → 2008.1.1
6	A	e5gmkA5	A:1256-1574	U6-snRNA_bdg,U5_2-snRNA_bdg	4967 → 4967.1 → 4967.1.1
7	b	e5gmkb1	b:1-162	LRR_9	207 → 207.1 → 207.1.1
8	c	e5gmkc1	c:60-111	Myb_DNA-binding	101 → 101.1 → 101.1.1
9	c	e5gmkc2	c:9-59	Myb_DNA-binding	101 → 101.1 → 101.1.1
10	C	e5gmkC1	C:102-439	GTP_EFTU	2004 → 2004.1 → 2004.1.1
11	C	e5gmkC2	C:440-510,C:530-589	1.1.7.0	1 → 1.1 → 1.1.7
12	C	e5gmkC3	C:859-975	EFG_C	304 → 304.24 → 304.24.1
13	C	e5gmkC4	C:590-674	304.24.1.0	304 → 304.24 → 304.24.1
14	C	e5gmkC5	C:675-858	EFG_IV	212 → 212.1 → 212.1.1
15	d	e5gmkd1	d:36-275	HAT, HAT_Syf1_CNRKL1_N	109 → 109.4 → 109.4.1
16	e	e5gmke1	e:44-108	LSM	4 → 4.1 → 4.1.1
17	g	e5gmkg1	g:15-108	LSM	4 → 4.1 → 4.1.1
18	h	e5gmkh1	h:12-83	LSM	4 → 4.1 → 4.1.1
19	H	e5gmkH1	H:30-96	Isy1	192 → 192.13 → 192.13.1
20	i	e5gmki1	i:10-92	LSM	4 → 4.1 → 4.1.1
21	j	e5gmkj1	j:2-76	LSM	4 → 4.1 → 4.1.1
22	J	e5gmkJ1	J:60-111	cwf21	6026 → 6026.1 → 6026.1.1
23	k	e5gmkk1	k:4-55,k:75-102	LSM	4 → 4.1 → 4.1.1
24	l	e5gmkl1	l:4-85	LSM	4 → 4.1 → 4.1.1
25	m	e5gmkm1	m:1-48,m:76-109	LSM	4 → 4.1 → 4.1.1
26	n	e5gmkn1	n:151-455	WD40	5 → 5.1 → 5.1.4
27	o	e5gmko1	o:1-52	U-box	376 → 376.1 → 376.1.1
28	O	e5gmkO1	O:111-447	WD40, Beta-prop_NOL10_N	5 → 5.1 → 5.1.4
29	p	e5gmkp1	p:1-52	U-box	376 → 376.1 → 376.1.1
30	q	e5gmkq1	q:144-493	5.1.5.0	5 → 5.1 → 5.1.5
31	q	e5gmkq2	q:1-61	U-box	376 → 376.1 → 376.1.1
32	Q	e5gmkQ1	Q:3-126	STL11_N	376 → 376.1 → 376.1.3
33	Q	e5gmkQ2	Q:202-264,Q:288-296	304.9.1.0	304 → 304.9 → 304.9.1
34	r	e5gmkr1	r:1-51	U-box	376 → 376.1 → 376.1.1
35	R	e5gmkR1	R:130-227	RRM_1	304 → 304.9 → 304.9.1
36	R	e5gmkR2	R:1-129	Torus	906 → 906.1 → 906.1.1
37	s	e5gmks1	s:6-55,s:75-102	LSM	4 → 4.1 → 4.1.1
38	T	e5gmkT1	T:1-157	BUD31	3952 → 3952.1 → 3952.1.1
39	u	e5gmku1	u:10-92	LSM	4 → 4.1 → 4.1.1
40	v	e5gmkv1	v:569-734	HAT_Syf1_CNRKL1_C	109 → 109.4 → 109.4.1
41	w	e5gmkw1	w:12-83	LSM	4 → 4.1 → 4.1.1
42	x	e5gmkx1	x:2-76	LSM	4 → 4.1 → 4.1.1
43	y	e5gmky1	y:4-85	LSM	4 → 4.1 → 4.1.1
44	z	e5gmkz1	z:1-48,z:76-109	LSM	4 → 4.1 → 4.1.1
45	Z	e5gmkZ1	Z:8-247	109.4.1.0	109 → 109.4 → 109.4.1
46	Z	e5gmkZ2	Z:279-485	MA3	109 → 109.4 → 109.4.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors