ECODEvolutionary Classification of Protein Domains

Home/PDB

PDB 5GTH

X-RAY DIFFRACTION2.50 Å39 chains41 ECOD domains

View in RCSB PDB

3D Structure(domains colored, ligands/nucleic acids shown)

Loading viewer...

Domains by Chain

Chain aPhotosystem II protein D1view chain

1 domain

e5gtha1(a:11-344)

Chain APhotosystem II protein D1view chain

1 domain

e5gthA1(A:11-344)

Chain bPhotosystem II CP47 reaction center proteinview chain

2 domains

e5gthb1(b:329-444)e5gthb2(b:2-328,b:445-505)

Chain BPhotosystem II CP47 reaction center proteinview chain

2 domains

e5gthB1(B:329-444)e5gthB2(B:2-328,B:445-505)

Chain cPhotosystem II CP43 reaction center proteinview chain

1 domain

e5gthc1(c:19-473)

Chain CPhotosystem II CP43 reaction center proteinview chain

1 domain

e5gthC1(C:23-473)

Chain dPhotosystem II D2 proteinview chain

1 domain

e5gthd1(d:12-352)

Chain DPhotosystem II D2 proteinview chain

1 domain

e5gthD1(D:11-352)

Chain eCytochrome b559 subunit alphaview chain

1 domain

e5gthe1(e:6-84)

Chain ECytochrome b559 subunit alphaview chain

1 domain

e5gthE1(E:4-84)

Chain fCytochrome b559 subunit betaview chain

1 domain

e5gthf1(f:15-45)

Chain FCytochrome b559 subunit betaview chain

1 domain

e5gthF1(F:12-45)

Chain hPhotosystem II reaction center protein Hview chain

1 domain

e5gthh1(h:2-66)

Chain HPhotosystem II reaction center protein Hview chain

1 domain

e5gthH1(H:2-65)

Chain iPhotosystem II reaction center protein Iview chain

1 domain

e5gthi1(i:1-38)

Chain IPhotosystem II reaction center protein Iview chain

1 domain

e5gthI1(I:1-38)

Chain jPhotosystem II reaction center protein Jview chain

1 domain

e5gthj1(j:1-39)

Chain JPhotosystem II reaction center protein Jview chain

1 domain

e5gthJ1(J:2-39)

Chain kPhotosystem II reaction center protein Kview chain

1 domain

e5gthk1(k:10-46)

Chain KPhotosystem II reaction center protein Kview chain

1 domain

e5gthK1(K:10-46)

Chain lPhotosystem II reaction center protein Lview chain

1 domain

e5gthl1(l:2-37)

Chain LPhotosystem II reaction center protein Lview chain

1 domain

e5gthL1(L:2-37)

Chain mPhotosystem II reaction center protein Mview chain

1 domain

e5gthm1(m:1-34)

Chain MPhotosystem II reaction center protein Mview chain

1 domain

e5gthM1(M:1-33)

Chain oPhotosystem II manganese-stabilizing polypeptideview chain

1 domain

e5gtho1(o:4-246)

Chain OPhotosystem II manganese-stabilizing polypeptideview chain

1 domain

e5gthO1(O:4-246)

Chain RPhotosystem II protein Yview chain

1 domain

e5gthR1(R:2-35)

Chain tPhotosystem II reaction center protein Tview chain

1 domain

e5gtht1(t:1-30)

Chain TPhotosystem II reaction center protein Tview chain

1 domain

e5gthT1(T:1-30)

Chain uPhotosystem II 12 kDa extrinsic proteinview chain

1 domain

e5gthu1(u:8-104)

Chain UPhotosystem II 12 kDa extrinsic proteinview chain

1 domain

e5gthU1(U:9-104)

Chain vCytochrome c-550view chain

1 domain

e5gthv1(v:1-137)

Chain VCytochrome c-550view chain

1 domain

e5gthV1(V:1-137)

Chain xPhotosystem II reaction center protein Xview chain

1 domain

e5gthx1(x:2-39)

Chain XPhotosystem II reaction center protein Xview chain

1 domain

e5gthX1(X:2-39)

Chain yPhotosystem II reaction center protein Ycf12view chain

1 domain

e5gthy1(y:18-46)

Chain YPhotosystem II reaction center protein Ycf12view chain

1 domain

e5gthY1(Y:18-46)

Chain zPhotosystem II reaction center protein Zview chain

1 domain

e5gthz1(z:1-62)

Chain ZPhotosystem II reaction center protein Zview chain

1 domain

e5gthZ1(Z:1-62)

All Domains (41)

#	Chain	Domain ID	Range	Family	Classification
1	a	e5gtha1	a:11-344	Photo_RC	5037 → 5037.1 → 5037.1.1
2	A	e5gthA1	A:11-344	Photo_RC	5037 → 5037.1 → 5037.1.1
3	b	e5gthb1	b:329-444	PSII	3744 → 3744.1 → 3744.1.1
4	b	e5gthb2	b:2-328,b:445-505	PSII	5075 → 5075.1 → 5075.1.1
5	B	e5gthB1	B:329-444	PSII	3744 → 3744.1 → 3744.1.1
6	B	e5gthB2	B:2-328,B:445-505	PSII	5075 → 5075.1 → 5075.1.1
7	c	e5gthc1	c:19-473	PSII	5075 → 5075.1 → 5075.1.1
8	C	e5gthC1	C:23-473	PSII	5075 → 5075.1 → 5075.1.1
9	d	e5gthd1	d:12-352	Photo_RC	5037 → 5037.1 → 5037.1.1
10	D	e5gthD1	D:11-352	Photo_RC	5037 → 5037.1 → 5037.1.1
11	e	e5gthe1	e:6-84	Cytochrom_B559,Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
12	E	e5gthE1	E:4-84	Cytochrom_B559,Cytochrom_B559a	5036 → 5036.1 → 5036.1.1
13	f	e5gthf1	f:15-45	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
14	F	e5gthF1	F:12-45	Cytochrom_B559	5036 → 5036.1 → 5036.1.1
15	h	e5gthh1	h:2-66	PsbH	5032 → 5032.1 → 5032.1.1
16	H	e5gthH1	H:2-65	PsbH	5032 → 5032.1 → 5032.1.1
17	i	e5gthi1	i:1-38	PsbI	5035 → 5035.1 → 5035.1.1
18	I	e5gthI1	I:1-38	PsbI	5035 → 5035.1 → 5035.1.1
19	j	e5gthj1	j:1-39	PsbJ	5031 → 5031.1 → 5031.1.1
20	J	e5gthJ1	J:2-39	PsbJ	5031 → 5031.1 → 5031.1.1
21	k	e5gthk1	k:10-46	PsbK	5034 → 5034.1 → 5034.1.1
22	K	e5gthK1	K:10-46	PsbK	5034 → 5034.1 → 5034.1.1
23	l	e5gthl1	l:2-37	PsbL	5030 → 5030.1 → 5030.1.1
24	L	e5gthL1	L:2-37	PsbL	5030 → 5030.1 → 5030.1.1
25	m	e5gthm1	m:1-34	PsbM	5033 → 5033.1 → 5033.1.1
26	M	e5gthM1	M:1-33	PsbM	5033 → 5033.1 → 5033.1.1
27	o	e5gtho1	o:4-246	MSP	5084 → 5084.1 → 5084.1.1
28	O	e5gthO1	O:4-246	MSP	5084 → 5084.1 → 5084.1.1
29	R	e5gthR1	R:2-35	PsbY	6106 → 6106.1 → 6106.1.1
30	t	e5gtht1	t:1-30	PsbT	3390 → 3390.1 → 3390.1.1
31	T	e5gthT1	T:1-30	PsbT	3390 → 3390.1 → 3390.1.1
32	u	e5gthu1	u:8-104	PsbU	102 → 102.1 → 102.1.1
33	U	e5gthU1	U:9-104	PsbU	102 → 102.1 → 102.1.1
34	v	e5gthv1	v:1-137	Cytochrom_C550	107 → 107.1 → 107.1.1
35	V	e5gthV1	V:1-137	Cytochrom_C550	107 → 107.1 → 107.1.1
36	x	e5gthx1	x:2-39	PsbX	3493 → 3493.1 → 3493.1.1
37	X	e5gthX1	X:2-39	PsbX	3493 → 3493.1 → 3493.1.1
38	y	e5gthy1	y:18-46	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
39	Y	e5gthY1	Y:18-46	PSII_Ycf12	3379 → 3379.1 → 3379.1.1
40	z	e5gthz1	z:1-62	Ycf9	5044 → 5044.1 → 5044.1.1
41	Z	e5gthZ1	Z:1-62	Ycf9	5044 → 5044.1 → 5044.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors