ECODEvolutionary Classification of Protein Domains

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PDB 5JMC

X-RAY DIFFRACTION2.64 Å8 chains12 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain ABotulinum neurotoxin type Aview chain

2 domains

e5jmcA1(A:1080-1296)e5jmcA2(A:872-1079)

Chain BSynaptic vesicle glycoprotein 2Cview chain

1 domain

e5jmcB1(B:476-566)

Chain CBotulinum neurotoxin type Aview chain

2 domains

e5jmcC1(C:872-1079)e5jmcC2(C:1080-1296)

Chain DSynaptic vesicle glycoprotein 2Cview chain

1 domain

e5jmcD1(D:476-567)

Chain EBotulinum neurotoxin type Aview chain

2 domains

e5jmcE1(E:1080-1296)e5jmcE2(E:872-1079)

Chain FSynaptic vesicle glycoprotein 2Cview chain

1 domain

e5jmcF1(F:476-567)

Chain GBotulinum neurotoxin type Aview chain

2 domains

e5jmcG1(G:872-1079)e5jmcG2(G:1080-1296)

Chain HSynaptic vesicle glycoprotein 2Cview chain

1 domain

e5jmcH1(H:476-564)

All Domains (12)

#	Chain	Domain ID	Range	Family	Classification
1	A	e5jmcA1	A:1080-1296	Toxin_R_bind_C	6 → 6.1 → 6.1.1
2	A	e5jmcA2	A:872-1079	Toxin_R_bind_N	10 → 10.1 → 10.1.1
3	B	e5jmcB1	B:476-566	LD_SV2	207 → 207.9 → 207.9.1
4	C	e5jmcC1	C:872-1079	Toxin_R_bind_N	10 → 10.1 → 10.1.1
5	C	e5jmcC2	C:1080-1296	Toxin_R_bind_C	6 → 6.1 → 6.1.1
6	D	e5jmcD1	D:476-567	LD_SV2	207 → 207.9 → 207.9.1
7	E	e5jmcE1	E:1080-1296	Toxin_R_bind_C	6 → 6.1 → 6.1.1
8	E	e5jmcE2	E:872-1079	Toxin_R_bind_N	10 → 10.1 → 10.1.1
9	F	e5jmcF1	F:476-567	LD_SV2	207 → 207.9 → 207.9.1
10	G	e5jmcG1	G:872-1079	Toxin_R_bind_N	10 → 10.1 → 10.1.1
11	G	e5jmcG2	G:1080-1296	Toxin_R_bind_C	6 → 6.1 → 6.1.1
12	H	e5jmcH1	H:476-564	LD_SV2	207 → 207.9 → 207.9.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors