ECODEvolutionary Classification of Protein Domains

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PDB 5KJR

X-RAY DIFFRACTION2.98 Å4 chains7 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain Gclade A/E 93TH057 HIV-1 gp120 coreview chain

2 domains

e5kjrG1(G:44-255,G:474-492)e5kjrG2(G:256-473)

Chain HN60-I3 FAB HEAVY CHAINview chain

2 domains

e5kjrH1(H:114-214)e5kjrH2(H:1-113)

Chain LN60-I3 FAB LIGHT CHAINview chain

2 domains

e5kjrL1(L:108-208)e5kjrL2(L:1-107)

Chain NM48U1 CD4 MIMETIC PEPTIDEview chain

1 domain

e5kjrN1(N:1-28)

All Domains (7)

#	Chain	Domain ID	Range	Family	Classification
1	G	e5kjrG1	G:44-255,G:474-492	GP120	1061 → 1061.1 → 1061.1.1
2	G	e5kjrG2	G:256-473	GP120	259 → 259.1 → 259.1.1
3	H	e5kjrH1	H:114-214	C1-set	11 → 11.1 → 11.1.1
4	H	e5kjrH2	H:1-113	V-set	11 → 11.1 → 11.1.1
5	L	e5kjrL1	L:108-208	C1-set	11 → 11.1 → 11.1.1
6	L	e5kjrL2	L:1-107	V-set	11 → 11.1 → 11.1.1
7	N	e5kjrN1	N:1-28	387.1.5.0	387 → 387.1 → 387.1.5

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors