ECODEvolutionary Classification of Protein Domains

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PDB 5LUF

ELECTRON MICROSCOPY62 chains45 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain 0Cytochrome c oxidase subunit 8B, mitochondrialview chain

1 domain

e5luf01(0:1-43)

Chain 1Cytochrome c oxidase subunit 4 isoform 1, mitochondrialview chain

1 domain

e5luf11(1:4-147)

Chain 2Cytochrome c oxidase subunit 5A, mitochondrialview chain

1 domain

e5luf21(2:1-109)

Chain 3Cytochrome c oxidase subunit 5B, mitochondrialview chain

1 domain

e5luf31(3:1-98)

Chain 4Cytochrome c oxidase subunit 6A2, mitochondrialview chain

1 domain

e5luf41(4:1-84)

Chain 5Cytochrome c oxidase subunit 6B1view chain

1 domain

e5luf51(5:11-85)

Chain 6Cytochrome c oxidase subunit 6Cview chain

1 domain

e5luf61(6:1-73)

Chain 7Cytochrome c oxidase subunit 7A1, mitochondrialview chain

1 domain

e5luf71(7:1-56)

Chain 8Cytochrome c oxidase subunit 7B, mitochondrialview chain

1 domain

e5luf81(8:6-54)

Chain 9Cytochrome c oxidase subunit 7C, mitochondrialview chain

1 domain

e5luf91(9:1-47)

Chain bCytochrome bview chain

2 domains

e5lufb1(b:1-260)e5lufb2(b:261-379)

Chain cCytochrome b-c1 complex subunit 1, mitochondrialview chain

2 domains

e5lufc1(c:234-446)e5lufc2(c:1-233)

Chain dCytochrome c1, heme protein, mitochondrialview chain

2 domains

e5lufd1(d:1-195)e5lufd2(d:196-241)

Chain eCytochrome b-c1 complex subunit Rieske, mitochondrialview chain

1 domain

e5lufe1(e:1-75)

Chain fCytochrome b-c1 complex subunit 7view chain

1 domain

e5luff1(f:5-110)

Chain gCytochrome b-c1 complex subunit 8view chain

1 domain

e5lufg1(g:1-81)

Chain hCytochrome b-c1 complex subunit 6, mitochondrialview chain

1 domain

e5lufh1(h:15-78)

Chain iCytochrome b-c1 complex subunit Rieske, mitochondrialview chain

1 domain

e5lufi1(i:46-78)

Chain jCytochrome b-c1 complex subunit 9view chain

1 domain

e5lufj1(j:1-62)

Chain kCytochrome b-c1 complex subunit 10view chain

1 domain

e5lufk1(k:15-36)

Chain lCytochrome b-c1 complex subunit 1, mitochondrialview chain

2 domains

e5lufl1(l:234-446)e5lufl2(l:1-233)

Chain mCytochrome b-c1 complex subunit 2, mitochondrialview chain

2 domains

e5lufm1(m:21-235)e5lufm2(m:236-439)

Chain nCytochrome b-c1 complex subunit 2, mitochondrialview chain

2 domains

e5lufn1(n:236-439)e5lufn2(n:21-235)

Chain oCytochrome bview chain

2 domains

e5lufo1(o:261-379)e5lufo2(o:1-260)

Chain pCytochrome c1, heme protein, mitochondrialview chain

2 domains

e5lufp1(p:196-241)e5lufp2(p:1-195)

Chain qCytochrome b-c1 complex subunit Rieske, mitochondrialview chain

2 domains

e5lufq2(q:1-69)e5lufq3(q:70-196)

Chain rCytochrome b-c1 complex subunit 7view chain

1 domain

e5lufr1(r:5-110)

Chain sCytochrome b-c1 complex subunit 8view chain

1 domain

e5lufs1(s:1-81)

Chain tCytochrome b-c1 complex subunit 6, mitochondrialview chain

1 domain

e5luft1(t:15-78)

Chain uCytochrome b-c1 complex subunit Rieske, mitochondrialview chain

1 domain

e5lufu1(u:46-78)

Chain vCytochrome b-c1 complex subunit 9view chain

1 domain

e5lufv1(v:1-62)

Chain wCytochrome b-c1 complex subunit 10view chain

1 domain

e5lufw1(w:15-36)

Chain xCytochrome c oxidase subunit 1view chain

1 domain

e5lufx1(x:1-514)

Chain yCytochrome c oxidase subunit 2view chain

2 domains

e5lufy1(y:91-227)e5lufy2(y:1-90)

Chain zCytochrome c oxidase subunit 3view chain

1 domain

e5lufz1(z:1-261)

All Domains (45)

#	Chain	Domain ID	Range	Family	Classification
1	0	e5luf01	0:1-43	COX8	5009 → 5009.1 → 5009.1.1
2	1	e5luf11	1:4-147	COX4	5003 → 5003.1 → 5003.1.1
3	2	e5luf21	2:1-109	COX5A	109 → 109.7 → 109.7.1
4	3	e5luf31	3:1-98	COX5B	375 → 375.1 → 375.1.8
5	4	e5luf41	4:1-84	COX6A	5004 → 5004.1 → 5004.1.1
6	5	e5luf51	5:11-85	COX6B	540 → 540.1 → 540.1.1
7	6	e5luf61	6:1-73	COX6C	5005 → 5005.1 → 5005.1.1
8	7	e5luf71	7:1-56	COX7a	5006 → 5006.1 → 5006.1.1
9	8	e5luf81	8:6-54	COX7B	5007 → 5007.1 → 5007.1.1
10	9	e5luf91	9:1-47	COX7C	5008 → 5008.1 → 5008.1.1
11	b	e5lufb1	b:1-260	Cytochrome_B, Cytochrom_B_N_2	5069 → 5069.1 → 5069.1.1
12	b	e5lufb2	b:261-379	Cytochrom_B_C	5068 → 5068.1 → 5068.1.1
13	c	e5lufc1	c:234-446	Peptidase_M16_C	309 → 309.1 → 309.1.1
14	c	e5lufc2	c:1-233	Peptidase_M16,Peptidase_M16_C	309 → 309.1 → 309.1.1
15	d	e5lufd1	d:1-195	Cytochrom_C1	107 → 107.1 → 107.1.1
16	d	e5lufd2	d:196-241	5013.1.1.0	5013 → 5013.1 → 5013.1.1
17	e	e5lufe1	e:1-75	UCR_TM	5014 → 5014.1 → 5014.1.1
18	f	e5luff1	f:5-110	UCR_14kD	5070 → 5070.1 → 5070.1.1
19	g	e5lufg1	g:1-81	UcrQ	5016 → 5016.1 → 5016.1.1
20	h	e5lufh1	h:15-78	UCR_hinge	5071 → 5071.1 → 5071.1.1
21	i	e5lufi1	i:46-78	Ubiq-Cytc-red_N	852 → 852.1 → 852.1.1
22	j	e5lufj1	j:1-62	UCR_UQCRX_QCR9	5017 → 5017.1 → 5017.1.1
23	k	e5lufk1	k:15-36	UCR_6-4kD	5018 → 5018.1 → 5018.1.1
24	l	e5lufl1	l:234-446	Peptidase_M16_C	309 → 309.1 → 309.1.1
25	l	e5lufl2	l:1-233	Peptidase_M16,Peptidase_M16_C	309 → 309.1 → 309.1.1
26	m	e5lufm1	m:21-235	Peptidase_M16	309 → 309.1 → 309.1.1
27	m	e5lufm2	m:236-439	Peptidase_M16_C	309 → 309.1 → 309.1.1
28	n	e5lufn1	n:236-439	Peptidase_M16_C	309 → 309.1 → 309.1.1
29	n	e5lufn2	n:21-235	Peptidase_M16	309 → 309.1 → 309.1.1
30	o	e5lufo1	o:261-379	Cytochrom_B_C	5068 → 5068.1 → 5068.1.1
31	o	e5lufo2	o:1-260	Cytochrome_B, Cytochrom_B_N_2	5069 → 5069.1 → 5069.1.1
32	p	e5lufp1	p:196-241	5013.1.1.0	5013 → 5013.1 → 5013.1.1
33	p	e5lufp2	p:1-195	Cytochrom_C1	107 → 107.1 → 107.1.1
34	q	e5lufq2	q:1-69	UCR_TM	5014 → 5014.1 → 5014.1.1
35	q	e5lufq3	q:70-196	Rieske	66 → 66.1 → 66.1.1
36	r	e5lufr1	r:5-110	UCR_14kD	5070 → 5070.1 → 5070.1.1
37	s	e5lufs1	s:1-81	UcrQ	5016 → 5016.1 → 5016.1.1
38	t	e5luft1	t:15-78	UCR_hinge	5071 → 5071.1 → 5071.1.1
39	u	e5lufu1	u:46-78	Ubiq-Cytc-red_N	852 → 852.1 → 852.1.1
40	v	e5lufv1	v:1-62	UCR_UQCRX_QCR9	5017 → 5017.1 → 5017.1.1
41	w	e5lufw1	w:15-36	UCR_6-4kD	5018 → 5018.1 → 5018.1.1
42	x	e5lufx1	x:1-514	COX1	5038 → 5038.1 → 5038.1.1
43	y	e5lufy1	y:91-227	COX2	3156 → 3156.1 → 3156.1.1
44	y	e5lufy2	y:1-90	COX2_TM	5040 → 5040.1 → 5040.1.1
45	z	e5lufz1	z:1-261	COX3	5039 → 5039.1 → 5039.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors