ECODEvolutionary Classification of Protein Domains

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PDB 5MKN

X-RAY DIFFRACTION2.55 Å28 chains28 ECOD domains

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3D Structure(domains colored, ligands/nucleic acids shown)

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Domains by Chain

Chain aLike-Sm ribonucleoprotein coreview chain

1 domain

e5mkna1(a:2-72)

Chain ALike-Sm ribonucleoprotein coreview chain

1 domain

e5mknA1(A:2-72)

Chain bLike-Sm ribonucleoprotein coreview chain

1 domain

e5mknb1(b:2-72)

Chain BLike-Sm ribonucleoprotein coreview chain

1 domain

e5mknB1(B:2-72)

Chain CLike-Sm ribonucleoprotein coreview chain

1 domain

e5mknC1(C:2-72)

Chain dLike-Sm ribonucleoprotein coreview chain

1 domain

e5mknd1(d:1-72)

Chain DLike-Sm ribonucleoprotein coreview chain

1 domain

e5mknD1(D:2-72)

Chain ELike-Sm ribonucleoprotein coreview chain

1 domain

e5mknE1(E:2-72)

Chain FLike-Sm ribonucleoprotein coreview chain

1 domain

e5mknF1(F:2-72)

Chain GLike-Sm ribonucleoprotein coreview chain

1 domain

e5mknG1(G:2-72)

Chain HLike-Sm ribonucleoprotein coreview chain

1 domain

e5mknH1(H:2-72)

Chain ILike-Sm ribonucleoprotein coreview chain

1 domain

e5mknI1(I:2-72)

Chain JLike-Sm ribonucleoprotein coreview chain

1 domain

e5mknJ1(J:2-72)

Chain KLike-Sm ribonucleoprotein coreview chain

1 domain

e5mknK1(K:2-72)

Chain LLike-Sm ribonucleoprotein coreview chain

1 domain

e5mknL1(L:2-72)

Chain MLike-Sm ribonucleoprotein coreview chain

1 domain

e5mknM1(M:2-72)

Chain NLike-Sm ribonucleoprotein coreview chain

1 domain

e5mknN1(N:2-72)

Chain OLike-Sm ribonucleoprotein coreview chain

1 domain

e5mknO1(O:2-72)

Chain PLike-Sm ribonucleoprotein coreview chain

1 domain

e5mknP1(P:2-72)

Chain QLike-Sm ribonucleoprotein coreview chain

1 domain

e5mknQ1(Q:2-72)

Chain RLike-Sm ribonucleoprotein coreview chain

1 domain

e5mknR1(R:2-72)

Chain TLike-Sm ribonucleoprotein coreview chain

1 domain

e5mknT1(T:2-72)

Chain ULike-Sm ribonucleoprotein coreview chain

1 domain

e5mknU1(U:2-72)

Chain VLike-Sm ribonucleoprotein coreview chain

1 domain

e5mknV1(V:2-72)

Chain WLike-Sm ribonucleoprotein coreview chain

1 domain

e5mknW1(W:2-72)

Chain XLike-Sm ribonucleoprotein coreview chain

1 domain

e5mknX1(X:2-72)

Chain YLike-Sm ribonucleoprotein coreview chain

1 domain

e5mknY1(Y:2-72)

Chain ZLike-Sm ribonucleoprotein coreview chain

1 domain

e5mknZ1(Z:2-72)

All Domains (28)

#	Chain	Domain ID	Range	Family	Classification
1	a	e5mkna1	a:2-72	LSM	4 → 4.1 → 4.1.1
2	A	e5mknA1	A:2-72	LSM	4 → 4.1 → 4.1.1
3	b	e5mknb1	b:2-72	LSM	4 → 4.1 → 4.1.1
4	B	e5mknB1	B:2-72	LSM	4 → 4.1 → 4.1.1
5	C	e5mknC1	C:2-72	LSM	4 → 4.1 → 4.1.1
6	d	e5mknd1	d:1-72	LSM	4 → 4.1 → 4.1.1
7	D	e5mknD1	D:2-72	LSM	4 → 4.1 → 4.1.1
8	E	e5mknE1	E:2-72	LSM	4 → 4.1 → 4.1.1
9	F	e5mknF1	F:2-72	LSM	4 → 4.1 → 4.1.1
10	G	e5mknG1	G:2-72	LSM	4 → 4.1 → 4.1.1
11	H	e5mknH1	H:2-72	LSM	4 → 4.1 → 4.1.1
12	I	e5mknI1	I:2-72	LSM	4 → 4.1 → 4.1.1
13	J	e5mknJ1	J:2-72	LSM	4 → 4.1 → 4.1.1
14	K	e5mknK1	K:2-72	LSM	4 → 4.1 → 4.1.1
15	L	e5mknL1	L:2-72	LSM	4 → 4.1 → 4.1.1
16	M	e5mknM1	M:2-72	LSM	4 → 4.1 → 4.1.1
17	N	e5mknN1	N:2-72	LSM	4 → 4.1 → 4.1.1
18	O	e5mknO1	O:2-72	LSM	4 → 4.1 → 4.1.1
19	P	e5mknP1	P:2-72	LSM	4 → 4.1 → 4.1.1
20	Q	e5mknQ1	Q:2-72	LSM	4 → 4.1 → 4.1.1
21	R	e5mknR1	R:2-72	LSM	4 → 4.1 → 4.1.1
22	T	e5mknT1	T:2-72	LSM	4 → 4.1 → 4.1.1
23	U	e5mknU1	U:2-72	LSM	4 → 4.1 → 4.1.1
24	V	e5mknV1	V:2-72	LSM	4 → 4.1 → 4.1.1
25	W	e5mknW1	W:2-72	LSM	4 → 4.1 → 4.1.1
26	X	e5mknX1	X:2-72	LSM	4 → 4.1 → 4.1.1
27	Y	e5mknY1	Y:2-72	LSM	4 → 4.1 → 4.1.1
28	Z	e5mknZ1	Z:2-72	LSM	4 → 4.1 → 4.1.1

Visualization Legend

ECOD domains (colored by index)Unclassified protein regionsNucleic acids (RNA/DNA)Ligands/cofactors